Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 DDX18P6-201ENST00000450119 1997 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.34□□□□□ -1.71
LMX1BO60663 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
LMX1BO60663 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.33□□□□□ -1.72
LMX1BO60663 SMG1P4-204ENST00000523028 4131 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 ZNF849P-201ENST00000594711 1566 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 ZNF876P-202ENST00000398732 1485 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC009643.2-201ENST00000603543 1448 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AL513185.3-201ENST00000433335 1300 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 Y_RNA.318-201ENST00000365131 97 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 RNA5SP455-201ENST00000365190 119 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LMX1BO60663 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 Y_RNA.472-201ENST00000384322 102 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 SNORD116-1-201ENST00000384335 95 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 EI24P3-201ENST00000399046 1062 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 MORF4L1P6-201ENST00000418771 268 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 RPS3AP37-201ENST00000419176 745 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 EIF4A1P1-201ENST00000420241 934 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 DDX39BP1-205ENST00000422507 192 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 USP9YP11-201ENST00000427537 717 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC005189.1-201ENST00000431286 310 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LMX1BO60663 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 AL589880.1-201ENST00000448271 287 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 TCEA1P1-201ENST00000449716 880 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 AC011037.1-201ENST00000483964 558 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC138409.2-202ENST00000507274 458 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AL671862.1-201ENST00000515851 349 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 RNA5SP249-201ENST00000516127 99 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 RAB9BP1-201ENST00000519581 626 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 AC087373.1-201ENST00000524920 491 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 CYCSP40-201ENST00000575927 294 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC110760.3-201ENST00000598794 467 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 MTND3P19-201ENST00000603825 345 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC067838.1-201ENST00000606064 577 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 MIR378J-201ENST00000611988 109 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 AC013470.4-201ENST00000619978 986 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 RPL23AP61-201ENST00000623642 466 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.33□□□□□ -1.72
LMX1BO60663 AC090897.3-201ENST00000636973 1157 ntBASIC4.33□□□□□ -1.72
LMX1BO60663 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.33□□□□□ -1.72
LMX1BO60663 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.33□□□□□ -1.72
LMX1BO60663 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
LMX1BO60663 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.32□□□□□ -1.72
LMX1BO60663 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LMX1BO60663 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LMX1BO60663 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LMX1BO60663 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.32□□□□□ -1.72
LMX1BO60663 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.32□□□□□ -1.72
LMX1BO60663 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LMX1BO60663 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LMX1BO60663 RNU6-1214P-201ENST00000363650 109 ntBASIC4.32□□□□□ -1.72
LMX1BO60663 RNU6-236P-201ENST00000363886 106 ntBASIC4.32□□□□□ -1.72
LMX1BO60663 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LMX1BO60663 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
LMX1BO60663 U6.112-201ENST00000384129 70 ntBASIC4.32□□□□□ -1.72
LMX1BO60663 RNA5SP87-201ENST00000384155 118 ntBASIC4.32□□□□□ -1.72
LMX1BO60663 RNU6-932P-201ENST00000391108 106 ntBASIC4.32□□□□□ -1.72
LMX1BO60663 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LMX1BO60663 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.32□□□□□ -1.72
LMX1BO60663 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.32□□□□□ -1.72
LMX1BO60663 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms