Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 AC244517.1-201ENST00000606030 2086 ntBASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 AC087045.3-201ENST00000623046 2468 ntBASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 MAPK10-333ENST00000641607 2481 ntBASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 KPNA2P2-201ENST00000419546 1489 ntBASIC7.43□□□□□ -1.22
VPS9D1Q9Y2B5 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC079949.2-201ENST00000617117 2933 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ZNF101P1-201ENST00000435701 1720 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AP004289.1-201ENST00000436307 2205 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.551-201ENST00000384661 102 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 RNA5SP297-201ENST00000391029 113 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ISY1-202ENST00000393292 988 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 RPL24P7-201ENST00000399435 453 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC005040.1-201ENST00000437783 482 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 LAMTOR5P1-201ENST00000444290 270 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.644-201ENST00000459006 113 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC116562.3-201ENST00000506136 177 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 TXNP6-201ENST00000510190 310 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.674-201ENST00000516362 113 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 SNORA40.14-201ENST00000516543 86 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 RNA5SP384-201ENST00000516615 116 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 TRIM77BP-201ENST00000524985 1119 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 CARD16-203ENST00000525374 503 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC068587.5-201ENST00000528506 175 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL355076.3-201ENST00000555838 587 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 MIR3689C-201ENST00000581239 72 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 FAM106CP-201ENST00000582212 507 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC093503.1-202ENST00000598743 478 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC090525.3-201ENST00000605601 189 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC097381.3-201ENST00000608962 462 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL080312.2-201ENST00000613001 630 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL138960.1-201ENST00000613838 513 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 NAA60-237ENST00000615865 326 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 LDHA-225ENST00000625635 141 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AL122126.1-201ENST00000546905 1318 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AP003471.1-202ENST00000319051 1988 ntBASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
VPS9D1Q9Y2B5 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms