Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC073587.1-201ENST00000447093 876 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 Z95152.1-201ENST00000453556 656 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 snoU13.1-201ENST00000459157 104 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC013356.1-201ENST00000489027 564 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC017037.1-201ENST00000508460 471 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC008958.1-201ENST00000511047 682 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC063950.1-201ENST00000552036 308 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 MIR5096-201ENST00000583713 70 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC004948.1-201ENST00000609858 672 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC015922.4-201ENST00000612568 690 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 SNX18P1Y-201ENST00000616231 511 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC244517.3-201ENST00000616254 1235 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 MIR7702-201ENST00000621931 59 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AP006248.2-201ENST00000623309 592 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AC073342.3-201ENST00000624211 193 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AP003497.2-201ENST00000624220 967 ntBASIC4.22□□□□□ -1.73
TREX1Q9NSU2 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TREX1Q9NSU2 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TREX1Q9NSU2 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TREX1Q9NSU2 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TREX1Q9NSU2 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
TREX1Q9NSU2 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
TREX1Q9NSU2 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RNU4-39P-201ENST00000362455 127 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RNU1-132P-201ENST00000364300 164 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 MIR93-201ENST00000385024 80 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RPL12P34-201ENST00000424532 479 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 OR6C71P-201ENST00000432580 913 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RPS3AP54-201ENST00000435535 734 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RPS29P19-201ENST00000479709 171 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC025554.1-201ENST00000505641 188 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC007599.1-201ENST00000568688 1174 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC068790.4-201ENST00000602474 263 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AL356218.2-201ENST00000605264 187 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AL158196.1-201ENST00000616786 434 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AL139254.3-201ENST00000641097 674 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TREX1Q9NSU2 AC092162.3-201ENST00000624511 1624 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 CYP1D1P-201ENST00000416662 1433 ntBASIC4.21□□□□□ -1.74
TREX1Q9NSU2 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RNU4-7P-201ENST00000364758 141 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RHOT1P2-201ENST00000366423 333 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 SNORA37-201ENST00000384504 129 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 MIR585-201ENST00000384887 94 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 AL160275.2-201ENST00000412010 394 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RPL26P29-201ENST00000415623 438 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 SEC63P1-201ENST00000425785 1258 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RWDD4P2-201ENST00000426392 563 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 CBX1P1-201ENST00000440184 427 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 ELOCP10-201ENST00000440624 327 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RWDD4P1-201ENST00000488019 565 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RN7SL205P-201ENST00000490174 284 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 AL133372.1-201ENST00000493565 745 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 RNA5SP154-201ENST00000516193 111 ntBASIC4.2□□□□□ -1.74
TREX1Q9NSU2 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms