Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC004690.1-201ENST00000418216 328 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 PSMD10P3-201ENST00000437000 448 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL645939.1-201ENST00000453429 797 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 SCARNA10-201ENST00000459255 330 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AC090543.1-201ENST00000492168 485 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 RPL30P11-201ENST00000495304 339 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 NDUFB5P1-201ENST00000508134 564 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AC108157.1-201ENST00000510511 539 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AC090151.1-201ENST00000520784 730 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 SOX5P1-201ENST00000524155 1127 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 PCNPP1-201ENST00000552501 511 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 MTND4LP24-201ENST00000572277 291 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 MTCO3P22-201ENST00000603219 784 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 AC133644.2-201ENST00000608142 540 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AC090510.2-201ENST00000617465 629 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 ZNF137P-201ENST00000456718 1920 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS39Q96JC1 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AL590290.1-201ENST00000405336 380 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 RPS12P5-201ENST00000423449 371 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AL031736.2-201ENST00000426573 787 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC005154.2-201ENST00000438110 379 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC073648.4-201ENST00000442655 781 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 HIGD1AP8-201ENST00000453927 274 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 OR5H4P-201ENST00000510851 923 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 HMGB3P13-201ENST00000511263 607 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AP001922.4-201ENST00000526967 290 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC008759.1-201ENST00000589783 983 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 ZNF92P3-201ENST00000596594 954 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC090181.2-201ENST00000602975 672 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC115621.1-201ENST00000604653 858 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AP002360.3-201ENST00000607673 710 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC110792.4-201ENST00000609843 298 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 U3.53-201ENST00000628922 216 ntBASIC4.55□□□□□ -1.68
VPS39Q96JC1 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS39Q96JC1 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS39Q96JC1 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 PNPT1P2-201ENST00000456768 2050 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 RN7SKP44-201ENST00000363602 316 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 RNU1-63P-201ENST00000383902 164 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 SDHCP2-201ENST00000398565 501 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC062016.2-201ENST00000420950 676 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 PDSS1P1-201ENST00000422953 1114 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 GTF2IP2-201ENST00000424290 697 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 RPS6P12-201ENST00000432491 726 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 ELOCP11-201ENST00000436690 332 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 ELOCP16-201ENST00000444494 332 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 RPS27AP15-201ENST00000447672 466 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC090013.1-201ENST00000485147 480 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 RPL32P9-201ENST00000487963 407 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms