Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTCO1P20-201ENST00000425366 358 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RPS7P14-201ENST00000426405 583 ntBASIC5.83□□□□□ -1.48
RNF4P78317 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AL161722.1-201ENST00000446972 1032 ntBASIC5.83□□□□□ -1.48
RNF4P78317 MORF4-201ENST00000447135 971 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC103563.5-201ENST00000455643 364 ntBASIC5.83□□□□□ -1.48
RNF4P78317 BX322784.1-201ENST00000455793 1077 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RPS15AP1-201ENST00000457423 391 ntBASIC5.83□□□□□ -1.48
RNF4P78317 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.83□□□□□ -1.48
RNF4P78317 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.83□□□□□ -1.48
RNF4P78317 FAM92A1P1-201ENST00000528023 890 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.83□□□□□ -1.48
RNF4P78317 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AC090502.2-201ENST00000549267 280 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 RPL21P5-201ENST00000554662 472 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 AP005119.2-201ENST00000579735 1105 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.83□□□□□ -1.48
RNF4P78317 CDRT1-208ENST00000630868 794 ntBASIC5.83□□□□□ -1.48
RNF4P78317 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 GUCY1B2-204ENST00000531898 1979 ntBASIC5.83□□□□□ -1.48
RNF4P78317 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 MTCO1P7-201ENST00000419523 1542 ntBASIC5.83□□□□□ -1.48
RNF4P78317 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 AC006378.2-201ENST00000623178 2476 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC131971.1-201ENST00000332881 1482 ntBASIC5.83□□□□□ -1.48
RNF4P78317 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 AC027575.3-201ENST00000583058 2747 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 AL022578.1-201ENST00000439330 1433 ntBASIC5.82□□□□□ -1.48
RNF4P78317 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF4P78317 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.82□□□□□ -1.48
RNF4P78317 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 RPS4XP5-202ENST00000449995 1334 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF4P78317 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
RNF4P78317 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF4P78317 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 RNA5SP346-201ENST00000363541 121 ntBASIC5.82□□□□□ -1.48
RNF4P78317 Y_RNA.160-201ENST00000363677 92 ntBASIC5.82□□□□□ -1.48
RNF4P78317 RNU1-65P-201ENST00000363919 148 ntBASIC5.82□□□□□ -1.48
RNF4P78317 RN7SKP237-201ENST00000364663 301 ntBASIC5.82□□□□□ -1.48
RNF4P78317 Y_RNA.573-201ENST00000384763 105 ntBASIC5.82□□□□□ -1.48
RNF4P78317 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.82□□□□□ -1.48
RNF4P78317 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 HSPD1P12-201ENST00000429127 1069 ntBASIC5.82□□□□□ -1.48
RNF4P78317 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 AC109583.1-201ENST00000432156 268 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 RABEPKP1-201ENST00000440529 1026 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC092967.1-201ENST00000449016 481 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 OR6K1P-201ENST00000456766 971 ntBASIC5.82□□□□□ -1.48
RNF4P78317 BTF3P5-201ENST00000457252 467 ntBASIC5.82□□□□□ -1.48
RNF4P78317 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 RN7SL254P-201ENST00000460609 284 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC092757.1-201ENST00000467293 467 ntBASIC5.82□□□□□ -1.48
RNF4P78317 OR52A4P-201ENST00000472867 958 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC068522.1-201ENST00000482895 345 ntBASIC5.82□□□□□ -1.48
RNF4P78317 RPL12P30-201ENST00000488389 499 ntBASIC5.82□□□□□ -1.48
RNF4P78317 UBA52P3-201ENST00000491303 382 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AP002453.1-201ENST00000492327 668 ntBASIC5.82□□□□□ -1.48
RNF4P78317 RNF138P1-201ENST00000502765 546 ntBASIC5.82□□□□□ -1.48
RNF4P78317 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 SNX18P24-201ENST00000505249 671 ntBASIC5.82□□□□□ -1.48
RNF4P78317 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF4P78317 SAP18P1-201ENST00000512058 390 ntBASIC5.82□□□□□ -1.48
RNF4P78317 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.82□□□□□ -1.48
RNF4P78317 RNA5SP473-201ENST00000516402 125 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms