Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SL518P-201ENST00000491887 280 ntBASIC6.44□□□□□ -1.38
MSX1P28360 TMEM251P1-201ENST00000503717 318 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX1P28360 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX1P28360 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX1P28360 OR5D15P-201ENST00000531671 942 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC244034.2-201ENST00000562504 509 ntBASIC6.44□□□□□ -1.38
MSX1P28360 MIR4680-201ENST00000580906 66 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC245389.1-201ENST00000605141 529 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AL008723.3-201ENST00000608926 449 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC130324.3-201ENST00000614165 542 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC015712.7-201ENST00000615211 635 ntBASIC6.44□□□□□ -1.38
MSX1P28360 Z69720.2-201ENST00000624755 279 ntBASIC6.44□□□□□ -1.38
MSX1P28360 MIR665-201ENST00000635949 72 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AL356585.10-201ENST00000641883 123 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AP004289.2-201ENST00000444413 1457 ntBASIC6.44□□□□□ -1.38
MSX1P28360 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.44□□□□□ -1.38
MSX1P28360 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 AC005034.3-201ENST00000604845 1747 ntBASIC6.44□□□□□ -1.38
MSX1P28360 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 Y_RNA.47-201ENST00000362697 108 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RNA5SP172-201ENST00000365061 118 ntBASIC6.43□□□□□ -1.38
MSX1P28360 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
MSX1P28360 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 ARSFP1-201ENST00000398758 477 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RN7SKP222-201ENST00000410651 315 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RNU6-193P-201ENST00000410977 107 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RNU6-1304P-201ENST00000411374 106 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RPS12P24-201ENST00000412619 387 ntBASIC6.43□□□□□ -1.38
MSX1P28360 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 AL731534.1-201ENST00000434711 269 ntBASIC6.43□□□□□ -1.38
MSX1P28360 SUMO1P3-201ENST00000439961 304 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC064862.5-201ENST00000440618 334 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX1P28360 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 MTATP8P1-201ENST00000467115 207 ntBASIC6.43□□□□□ -1.38
MSX1P28360 GMFBP1-201ENST00000467831 427 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC010655.3-201ENST00000478818 450 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 RN7SL868P-201ENST00000485915 303 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RPS4XP23-201ENST00000487801 237 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC026826.1-201ENST00000493002 361 ntBASIC6.43□□□□□ -1.38
MSX1P28360 EEF1A1P25-201ENST00000495704 1267 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RN7SL649P-201ENST00000496974 275 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX1P28360 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 DCAF13P2-201ENST00000514188 555 ntBASIC6.43□□□□□ -1.38
MSX1P28360 Y_RNA.665-201ENST00000516177 98 ntBASIC6.43□□□□□ -1.38
MSX1P28360 RNU6-410P-201ENST00000517006 107 ntBASIC6.43□□□□□ -1.38
MSX1P28360 NARSP2-201ENST00000518524 679 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AC009902.1-201ENST00000519351 183 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX1P28360 AC024405.1-201ENST00000532521 1042 ntBASIC6.43□□□□□ -1.38
MSX1P28360 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 AC092332.1-201ENST00000563684 829 ntBASIC6.43□□□□□ -1.38
MSX1P28360 MIR5682-201ENST00000584864 76 ntBASIC6.43□□□□□ -1.38
MSX1P28360 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX1P28360 CCDC150P1-201ENST00000537123 2215 ntBASIC6.43□□□□□ -1.38
MSX1P28360 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
MSX1P28360 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX1P28360 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms