Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MT-RNR1-201ENST00000389680 954 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AL161909.1-201ENST00000397390 712 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC4P09017 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC4P09017 NRBF2P2-201ENST00000413087 861 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC4P09017 UBE2V2P1-201ENST00000434717 398 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC4P09017 OR6C72P-201ENST00000451403 892 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 NUTF2P7-201ENST00000453086 375 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 RPL7P19-201ENST00000469948 618 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC4P09017 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC4P09017 AC099522.1-202ENST00000514718 367 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 SNORD116-30-201ENST00000516468 85 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC008759.1-201ENST00000589783 983 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AL161729.3-201ENST00000603533 673 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 ARF4P1-201ENST00000605447 541 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AC020658.4-201ENST00000613987 684 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC068831.8-201ENST00000620171 435 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 AP003499.2-201ENST00000624100 483 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC4P09017 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HOXC4P09017 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 LARP1BP1-201ENST00000506036 1359 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
HOXC4P09017 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXC4P09017 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC4P09017 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 RNA5SP22-201ENST00000365393 109 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 RNA5SP105-201ENST00000391123 113 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 LAP3P1-201ENST00000403648 294 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC4P09017 RPL23AP38-201ENST00000423801 469 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 COX6CP15-201ENST00000426313 211 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 RPS27AP12-201ENST00000429552 465 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 CEACAMP1-201ENST00000434624 1035 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC4P09017 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC4P09017 RPS27AP13-201ENST00000498403 237 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 SNORA31.9-201ENST00000516429 84 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC4P09017 AL109766.1-201ENST00000555080 552 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC007224.1-201ENST00000564410 144 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 MIR3908-201ENST00000579798 126 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AL354984.3-201ENST00000604803 325 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AL160290.3-201ENST00000604869 165 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 SNX18P1Y-201ENST00000616231 511 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC009704.2-201ENST00000618739 483 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 AC007546.1-201ENST00000619452 559 ntBASIC4.24□□□□□ -1.73
HOXC4P09017 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC4P09017 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC4P09017 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
HOXC4P09017 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 RNU1-20P-201ENST00000363314 162 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 RPL5P19-201ENST00000404228 893 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AL139039.2-201ENST00000407436 479 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC4P09017 MFSD13B-201ENST00000420133 1290 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 RBMY1KP-201ENST00000423480 476 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC4P09017 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 AC114755.5-201ENST00000447760 831 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 NPM1P39-201ENST00000449818 867 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 AC133473.1-201ENST00000455173 299 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC026616.1-201ENST00000523157 525 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 AC006064.5-201ENST00000541782 248 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC4P09017 RPL21P7-201ENST00000557463 483 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms