Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4BO75351 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
VPS4BO75351 AC112198.2-201ENST00000426589 6996 ntBASIC5.3□□□□□ -1.56
VPS4BO75351 AC011755.1-201ENST00000623763 2049 ntBASIC5.3□□□□□ -1.56
VPS4BO75351 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
VPS4BO75351 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 CASC19-284ENST00000642142 1868 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AP000776.1-201ENST00000530032 1663 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC131971.1-201ENST00000332881 1482 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 MAPK10-328ENST00000641553 4009 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SNORA62.2-201ENST00000364672 152 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
VPS4BO75351 AL136131.1-201ENST00000406079 803 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SNORA11C-201ENST00000408532 129 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 COX5BP7-201ENST00000414780 274 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SLC35E1P1-201ENST00000419313 864 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC006960.1-201ENST00000419980 153 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC004074.1-201ENST00000421810 1063 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 AL593851.1-201ENST00000426171 157 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 MTCO1P3-201ENST00000429327 192 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 RPL12P17-201ENST00000432393 498 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC079776.3-201ENST00000450665 370 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 RPL31P3-201ENST00000458430 332 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 RPS23P6-201ENST00000466136 431 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC079841.1-201ENST00000481228 950 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 UBA52P7-201ENST00000486088 380 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC022133.1-201ENST00000490961 571 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 EIF3KP3-201ENST00000514461 639 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 MTND4LP31-201ENST00000514859 294 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 NRBF2P4-201ENST00000520874 850 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC040958.1-201ENST00000561102 201 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC127024.5-201ENST00000580085 462 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC106791.2-201ENST00000604680 391 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC105129.3-201ENST00000605455 485 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC069545.1-201ENST00000605671 358 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AC109583.2-201ENST00000617367 129 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC5.29□□□□□ -1.56
VPS4BO75351 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 AC114786.1-201ENST00000512892 1415 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 OR9K1P-202ENST00000641111 3217 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS4BO75351 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4BO75351 AL445523.1-201ENST00000451184 1362 ntBASIC5.29□□□□□ -1.56
VPS4BO75351 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4BO75351 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4BO75351 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4BO75351 SMG1P7-201ENST00000565246 2704 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4BO75351 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4BO75351 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4BO75351 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
VPS4BO75351 RN7SKP149-201ENST00000363008 344 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 Y_RNA.201-201ENST00000364052 96 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 RNU4-4P-201ENST00000364588 130 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 OR1L1-202ENST00000373686 1083 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 HMGB3P7-201ENST00000400214 611 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
VPS4BO75351 AC007435.1-201ENST00000421086 415 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 AC113412.1-201ENST00000425840 504 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 MTND1P20-201ENST00000430341 950 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS4BO75351 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4BO75351 CNOT7P2-201ENST00000441051 832 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 TCEA1P3-201ENST00000443005 880 ntBASIC5.28□□□□□ -1.56
VPS4BO75351 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4BO75351 AL450023.1-201ENST00000450868 751 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms