Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC069439.1-201ENST00000494739 167 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 HSPE1P23-201ENST00000509838 286 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AP000619.3-201ENST00000535634 1127 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL352979.3-201ENST00000553515 247 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC091489.2-201ENST00000566263 604 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC002310.3-201ENST00000569728 723 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC068276.1-201ENST00000605793 379 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 MIR6889-201ENST00000613185 59 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL139099.4-201ENST00000614802 114 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL357080.1-201ENST00000617394 239 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC112255.1-201ENST00000624070 2493 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC135068.5-201ENST00000624197 983 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC007382.1-201ENST00000624376 2618 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MTND5P26-201ENST00000426018 1752 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MIR365B-201ENST00000362317 111 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 RNU6-500P-201ENST00000362349 107 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MT-TL1-201ENST00000386347 75 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC016739.1-201ENST00000405359 345 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 RPS12P17-201ENST00000438591 377 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC073614.1-201ENST00000438690 650 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 RPL36AP33-201ENST00000450395 310 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 SSXP1-201ENST00000453640 473 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 PPIAP27-201ENST00000453800 265 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC104339.1-201ENST00000465478 348 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC005165.2-201ENST00000466070 380 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 NCOR1P1-202ENST00000486162 291 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 GAPDHP62-201ENST00000515313 990 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 RN7SKP238-201ENST00000516483 249 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 TBCA-203ENST00000517679 545 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AC131902.3-201ENST00000611767 581 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 AL591926.1-201ENST00000620542 217 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 PCMTD1P7-201ENST00000634506 357 ntBASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC39Q9UFE4 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms