Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPS27P5-201ENST00000444247 244 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 EIF2S2P2-201ENST00000447161 982 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL162591.2-201ENST00000449634 317 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 XKRYP5-201ENST00000449659 483 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 HSFY5P-201ENST00000453726 309 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL133244.1-201ENST00000456007 258 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC021205.1-201ENST00000468797 348 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 C1DP5-201ENST00000525775 383 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC005868.1-201ENST00000536421 331 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 TOMM20P2-201ENST00000540082 421 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 RN7SL652P-201ENST00000577769 300 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC100778.3-201ENST00000580060 1750 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL049844.2-201ENST00000604280 628 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC011472.4-201ENST00000615848 491 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 BNIP3P41-202ENST00000616656 861 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC093875.1-201ENST00000623688 504 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC120338.1-201ENST00000625074 1541 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 CASC19-284ENST00000642142 1868 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC3Q9BQI4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC008432.1-201ENST00000615912 1320 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RPS27AP11-201ENST00000402798 447 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL034374.1-201ENST00000406329 351 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC140479.3-201ENST00000418944 1126 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 UQCRBP1-201ENST00000421129 336 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 VDAC1P6-201ENST00000430062 855 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 TMX2P1-201ENST00000436507 708 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 Z95152.1-201ENST00000453556 656 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC103987.1-201ENST00000473394 348 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC093840.1-201ENST00000511599 336 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RNA5SP249-201ENST00000516127 99 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RN7SKP141-201ENST00000516167 338 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RNU6-1308P-201ENST00000516817 103 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 CIR1P1-201ENST00000524055 1133 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC104229.1-201ENST00000561364 255 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL109741.3-201ENST00000561748 592 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC069061.3-201ENST00000582254 823 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 ABI1P1-201ENST00000603375 1120 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC112503.2-201ENST00000609005 552 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC018645.2-201ENST00000609151 472 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC110792.4-201ENST00000609843 298 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 MLECP1-201ENST00000615893 709 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC024023.1-201ENST00000624530 922 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 MIR6830-201ENST00000636015 70 ntBASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC3Q9BQI4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms