Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.84□□□□□ -1.47
RNF4P78317 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 MTND4P23-201ENST00000447723 1363 ntBASIC5.84□□□□□ -1.47
RNF4P78317 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.84□□□□□ -1.47
RNF4P78317 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 STAG3L4-201ENST00000352103 530 ntBASIC5.84□□□□□ -1.47
RNF4P78317 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
RNF4P78317 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 RNU6-534P-201ENST00000364877 106 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.84□□□□□ -1.47
RNF4P78317 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 Y_RNA.409-201ENST00000383990 98 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RNU6-1009P-201ENST00000390996 107 ntBASIC5.84□□□□□ -1.47
RNF4P78317 MIR1275-201ENST00000408770 80 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RNU2-18P-201ENST00000411224 162 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC073264.1-201ENST00000411508 416 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 UBE2V1P14-201ENST00000415815 558 ntBASIC5.84□□□□□ -1.47
RNF4P78317 USP9YP36-201ENST00000424581 829 ntBASIC5.84□□□□□ -1.47
RNF4P78317 BX890604.2-201ENST00000427883 474 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.84□□□□□ -1.47
RNF4P78317 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 MTND6P13-201ENST00000443510 523 ntBASIC5.84□□□□□ -1.47
RNF4P78317 Z82190.1-201ENST00000454534 490 ntBASIC5.84□□□□□ -1.47
RNF4P78317 VPS25P1-201ENST00000455691 508 ntBASIC5.84□□□□□ -1.47
RNF4P78317 MTND1P11-201ENST00000456661 876 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RPL38P1-201ENST00000460914 211 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RN7SL168P-201ENST00000463821 279 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC104339.1-201ENST00000465478 348 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RPL23AP12-201ENST00000467573 473 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 POU5F1P7-201ENST00000508759 541 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC093809.1-201ENST00000509155 340 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC006499.2-201ENST00000513470 337 ntBASIC5.84□□□□□ -1.47
RNF4P78317 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 RNU6-358P-201ENST00000516564 75 ntBASIC5.84□□□□□ -1.47
RNF4P78317 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.84□□□□□ -1.47
RNF4P78317 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.84□□□□□ -1.47
RNF4P78317 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.84□□□□□ -1.47
RNF4P78317 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.84□□□□□ -1.47
RNF4P78317 AC090236.2-201ENST00000587933 1101 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AC067852.5-201ENST00000589299 310 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.84□□□□□ -1.47
RNF4P78317 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.84□□□□□ -1.47
RNF4P78317 AL139286.1-201ENST00000604465 483 ntBASIC5.84□□□□□ -1.47
RNF4P78317 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.84□□□□□ -1.47
RNF4P78317 MEMO1P5-201ENST00000604810 406 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AL020991.1-201ENST00000612314 373 ntBASIC5.84□□□□□ -1.47
RNF4P78317 MIR7109-201ENST00000613748 65 ntBASIC5.84□□□□□ -1.47
RNF4P78317 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.84□□□□□ -1.47
RNF4P78317 AC005618.4-201ENST00000625053 554 ntBASIC5.84□□□□□ -1.47
RNF4P78317 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.84□□□□□ -1.47
RNF4P78317 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 LINC02019-201ENST00000608605 2060 ntBASIC5.84□□□□□ -1.47
RNF4P78317 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
RNF4P78317 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
RNF4P78317 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 AC116158.1-201ENST00000560231 2129 ntBASIC5.83□□□□□ -1.48
RNF4P78317 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF4P78317 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF4P78317 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
RNF4P78317 AC105749.1-201ENST00000631338 2008 ntBASIC5.83□□□□□ -1.48
RNF4P78317 Y_RNA.89-201ENST00000363031 102 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RN7SKP187-201ENST00000365536 330 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RN7SKP285-201ENST00000410137 318 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RN7SKP121-201ENST00000410842 305 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AL035422.1-201ENST00000414193 397 ntBASIC5.83□□□□□ -1.48
RNF4P78317 RPL24P2-201ENST00000421023 475 ntBASIC5.83□□□□□ -1.48
RNF4P78317 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.83□□□□□ -1.48
RNF4P78317 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms