Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.01□□□□□ -1.61
SCN4AP35499 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SCN4AP35499 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.01□□□□□ -1.61
SCN4AP35499 AL049634.3-201ENST00000604968 457 ntBASIC5.01□□□□□ -1.61
SCN4AP35499 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.01□□□□□ -1.61
SCN4AP35499 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.01□□□□□ -1.61
SCN4AP35499 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SCN4AP35499 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SCN4AP35499 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5□□□□□ -1.61
SCN4AP35499 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
SCN4AP35499 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5□□□□□ -1.61
SCN4AP35499 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5□□□□□ -1.61
SCN4AP35499 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5□□□□□ -1.61
SCN4AP35499 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SCN4AP35499 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SCN4AP35499 AC058791.1-201ENST00000608412 3198 ntBASIC5□□□□□ -1.61
SCN4AP35499 RNU2-65P-201ENST00000410162 185 ntBASIC5□□□□□ -1.61
SCN4AP35499 RN7SKP177-201ENST00000410567 355 ntBASIC5□□□□□ -1.61
SCN4AP35499 AL450992.3-201ENST00000413192 568 ntBASIC5□□□□□ -1.61
SCN4AP35499 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5□□□□□ -1.61
SCN4AP35499 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5□□□□□ -1.61
SCN4AP35499 HPRT1P2-201ENST00000505250 544 ntBASIC5□□□□□ -1.61
SCN4AP35499 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5□□□□□ -1.61
SCN4AP35499 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5□□□□□ -1.61
SCN4AP35499 BTG4P1-201ENST00000510421 183 ntBASIC5□□□□□ -1.61
SCN4AP35499 PTS-202ENST00000524931 696 ntTSL 3 BASIC5□□□□□ -1.61
SCN4AP35499 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5□□□□□ -1.61
SCN4AP35499 AC097505.1-201ENST00000610199 565 ntBASIC5□□□□□ -1.61
SCN4AP35499 AC007546.2-201ENST00000623996 360 ntBASIC5□□□□□ -1.61
SCN4AP35499 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5□□□□□ -1.61
SCN4AP35499 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5□□□□□ -1.61
SCN4AP35499 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5□□□□□ -1.61
SCN4AP35499 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
SCN4AP35499 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SCN4AP35499 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SCN4AP35499 RPL21P17-201ENST00000397467 475 ntBASIC5□□□□□ -1.61
SCN4AP35499 PLGLA-201ENST00000465668 449 ntBASIC5□□□□□ -1.61
SCN4AP35499 AC090686.1-201ENST00000481577 749 ntBASIC5□□□□□ -1.61
SCN4AP35499 RNU6-352P-201ENST00000516908 107 ntBASIC5□□□□□ -1.61
SCN4AP35499 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5□□□□□ -1.61
SCN4AP35499 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5□□□□□ -1.61
SCN4AP35499 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5□□□□□ -1.61
SCN4AP35499 Z98200.1-201ENST00000607298 470 ntBASIC5□□□□□ -1.61
SCN4AP35499 AL442067.2-201ENST00000614033 363 ntBASIC5□□□□□ -1.61
SCN4AP35499 AC016957.2-201ENST00000616998 848 ntBASIC5□□□□□ -1.61
SCN4AP35499 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5□□□□□ -1.61
SCN4AP35499 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.99□□□□□ -1.61
SCN4AP35499 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.99□□□□□ -1.61
SCN4AP35499 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SCN4AP35499 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.99□□□□□ -1.61
SCN4AP35499 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 MIR34B-201ENST00000385076 84 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 ATP5F1P4-201ENST00000397288 746 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.99□□□□□ -1.61
SCN4AP35499 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.99□□□□□ -1.61
SCN4AP35499 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SCN4AP35499 FTH1P25-201ENST00000447665 469 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 AC104306.1-201ENST00000449702 371 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.99□□□□□ -1.61
SCN4AP35499 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.99□□□□□ -1.61
SCN4AP35499 SETP6-201ENST00000479329 568 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 RPS4XP15-201ENST00000489210 795 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 AC108145.1-201ENST00000503770 153 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 RNU1-95P-201ENST00000516357 160 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 RNU1-128P-201ENST00000516704 160 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.99□□□□□ -1.61
SCN4AP35499 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.99□□□□□ -1.61
SCN4AP35499 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 AC110743.1-201ENST00000584870 478 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 U3.45-201ENST00000607547 219 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 AP002360.3-201ENST00000607673 710 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 FP236240.3-201ENST00000623061 327 ntBASIC4.99□□□□□ -1.61
SCN4AP35499 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SCN4AP35499 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SCN4AP35499 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.99□□□□□ -1.61
SCN4AP35499 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 AL035425.3-201ENST00000564206 4996 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 RNA5SP151-201ENST00000365632 117 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 AC112206.1-201ENST00000468416 477 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 DEFB109F-201ENST00000491870 277 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.98□□□□□ -1.61
SCN4AP35499 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.98□□□□□ -1.61
SCN4AP35499 RNA5SP360-201ENST00000516555 118 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms