Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC008432.1-201ENST00000615912 1320 ntBASIC5.33□□□□□ -1.56
CIITAP33076 ZNF29P-201ENST00000225587 168 ntBASIC5.33□□□□□ -1.56
CIITAP33076 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CIITAP33076 RNU6-468P-201ENST00000384003 109 ntBASIC5.33□□□□□ -1.56
CIITAP33076 RNU6-207P-201ENST00000384137 107 ntBASIC5.33□□□□□ -1.56
CIITAP33076 RNU6-1005P-201ENST00000384519 107 ntBASIC5.33□□□□□ -1.56
CIITAP33076 RNU6-298P-201ENST00000390888 96 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AF228730.1-201ENST00000397972 663 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AP000580.1-201ENST00000404439 358 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AL160175.1-201ENST00000428124 247 ntBASIC5.33□□□□□ -1.56
CIITAP33076 FABP7P2-201ENST00000429946 379 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AL138878.2-201ENST00000440581 1241 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC011753.3-201ENST00000443436 406 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 AC020890.1-201ENST00000491837 504 ntBASIC5.33□□□□□ -1.56
CIITAP33076 RPL36AP41-201ENST00000493820 306 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC010374.1-201ENST00000503762 1237 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC093720.1-201ENST00000505681 714 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.33□□□□□ -1.56
CIITAP33076 AC133963.2-201ENST00000513686 578 ntBASIC5.33□□□□□ -1.56
CIITAP33076 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 RNU6-513P-201ENST00000516104 104 ntBASIC5.33□□□□□ -1.56
CIITAP33076 SNORA19.3-201ENST00000516165 130 ntBASIC5.33□□□□□ -1.56
CIITAP33076 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.33□□□□□ -1.56
CIITAP33076 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 NPM1P35-201ENST00000533043 868 ntBASIC5.33□□□□□ -1.56
CIITAP33076 LRRC34P1-201ENST00000542742 915 ntBASIC5.33□□□□□ -1.56
CIITAP33076 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC5.33□□□□□ -1.56
CIITAP33076 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC5.33□□□□□ -1.56
CIITAP33076 DPRXP4-201ENST00000578053 568 ntBASIC5.33□□□□□ -1.56
CIITAP33076 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.33□□□□□ -1.56
CIITAP33076 MIR4472-2-201ENST00000582069 67 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.33□□□□□ -1.56
CIITAP33076 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.33□□□□□ -1.56
CIITAP33076 AC023813.4-201ENST00000607580 580 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC009974.1-201ENST00000608881 455 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC087683.2-201ENST00000611384 326 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.33□□□□□ -1.56
CIITAP33076 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.33□□□□□ -1.56
CIITAP33076 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CIITAP33076 AC011815.3-201ENST00000624194 473 ntBASIC5.33□□□□□ -1.56
CIITAP33076 AC119674.1-212ENST00000641155 993 ntBASIC5.33□□□□□ -1.56
CIITAP33076 STX3-208ENST00000641815 3236 ntBASIC5.33□□□□□ -1.56
CIITAP33076 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CIITAP33076 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CIITAP33076 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.33□□□□□ -1.56
CIITAP33076 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CIITAP33076 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 AC010329.2-201ENST00000595195 2737 ntBASIC5.32□□□□□ -1.56
CIITAP33076 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CIITAP33076 SMG1P4-204ENST00000523028 4131 ntBASIC5.32□□□□□ -1.56
CIITAP33076 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.32□□□□□ -1.56
CIITAP33076 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 RAD1P1-201ENST00000231383 813 ntBASIC5.32□□□□□ -1.56
CIITAP33076 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 RNU6-225P-201ENST00000384613 103 ntBASIC5.32□□□□□ -1.56
CIITAP33076 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CIITAP33076 RPL37P18-201ENST00000411602 243 ntBASIC5.32□□□□□ -1.56
CIITAP33076 CTSL3P-202ENST00000412179 788 ntBASIC5.32□□□□□ -1.56
CIITAP33076 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AC092447.2-201ENST00000435487 669 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AP000936.3-201ENST00000438127 255 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.32□□□□□ -1.56
CIITAP33076 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 NPM1P39-201ENST00000449818 867 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC5.32□□□□□ -1.56
CIITAP33076 RPL12P20-201ENST00000475538 479 ntBASIC5.32□□□□□ -1.56
CIITAP33076 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 AC093534.1-201ENST00000504977 132 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 RFPL4AP5-201ENST00000514977 504 ntBASIC5.32□□□□□ -1.56
CIITAP33076 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.32□□□□□ -1.56
CIITAP33076 EEF1A1P37-201ENST00000522748 715 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AP000916.1-201ENST00000533869 835 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AC087894.1-201ENST00000538359 518 ntBASIC5.32□□□□□ -1.56
CIITAP33076 BNIP3P1-201ENST00000547295 580 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.32□□□□□ -1.56
CIITAP33076 CBX3P2-202ENST00000583365 535 ntBASIC5.32□□□□□ -1.56
CIITAP33076 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 AL022067.1-201ENST00000602426 454 ntBASIC5.32□□□□□ -1.56
CIITAP33076 RPP40P2-201ENST00000603596 712 ntBASIC5.32□□□□□ -1.56
CIITAP33076 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AC087283.1-201ENST00000604029 1074 ntBASIC5.32□□□□□ -1.56
CIITAP33076 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AP000484.1-201ENST00000620067 1252 ntBASIC5.32□□□□□ -1.56
CIITAP33076 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.32□□□□□ -1.56
CIITAP33076 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CIITAP33076 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms