Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BNIP3P11-201ENST00000603878 563 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC104662.1-201ENST00000604448 511 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC096553.1-201ENST00000605169 829 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AL160281.1-201ENST00000605307 311 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AL391497.1-201ENST00000608671 547 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC022106.2-201ENST00000620114 757 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.06□□□□□ -1.6
COL5A3P25940 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 AC006971.1-201ENST00000407916 4486 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 EOGT-210ENST00000615922 1931 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 LINC00561-201ENST00000565815 2738 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.06□□□□□ -1.6
COL5A3P25940 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.06□□□□□ -1.6
COL5A3P25940 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 MIR200C-201ENST00000384980 68 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.06□□□□□ -1.6
COL5A3P25940 Z97055.1-201ENST00000419730 712 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 TCEA1P2-201ENST00000420496 906 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 CYCSP53-201ENST00000455540 265 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 SNRPCP3-201ENST00000474888 476 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.06□□□□□ -1.6
COL5A3P25940 OR4A2P-201ENST00000527276 913 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC063950.1-201ENST00000552036 308 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 NPM1P47-201ENST00000560843 856 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC022968.1-201ENST00000567372 442 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC005412.1-201ENST00000580812 1049 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC008759.1-201ENST00000589783 983 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 SNX6P1-201ENST00000601728 1224 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AL645927.2-201ENST00000618350 349 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC140113.4-201ENST00000622087 222 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 MIR3651-201ENST00000630427 90 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A3P25940 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A3P25940 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
COL5A3P25940 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC5.05□□□□□ -1.6
COL5A3P25940 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A3P25940 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A3P25940 RPS23P10-201ENST00000416185 486 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.05□□□□□ -1.6
COL5A3P25940 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.05□□□□□ -1.6
COL5A3P25940 RPS17P13-201ENST00000448974 407 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 FABP3P2-201ENST00000453169 399 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 AC112206.1-201ENST00000468416 477 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 DEFB109A-201ENST00000482450 265 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 DEFB109F-201ENST00000491870 277 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A3P25940 AC138938.1-201ENST00000515431 782 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL5A3P25940 AC244505.7-201ENST00000599675 272 ntBASIC5.05□□□□□ -1.6
COL5A3P25940 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A3P25940 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A3P25940 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A3P25940 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.05□□□□□ -1.6
COL5A3P25940 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL5A3P25940 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL5A3P25940 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL5A3P25940 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
COL5A3P25940 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL5A3P25940 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC104978.1-201ENST00000449387 391 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC007967.1-201ENST00000455422 1159 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC108022.1-201ENST00000493466 478 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC093853.1-201ENST00000515689 483 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 CYCSP30-201ENST00000546447 172 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.04□□□□□ -1.6
COL5A3P25940 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A3P25940 MIR4472-2-201ENST00000582069 67 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A3P25940 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A3P25940 AC097505.1-201ENST00000610199 565 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 AC016957.2-201ENST00000616998 848 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A3P25940 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
COL5A3P25940 AC083837.1-201ENST00000565297 2994 ntBASIC5.04□□□□□ -1.6
COL5A3P25940 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A3P25940 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL5A3P25940 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 AC067945.1-201ENST00000342609 618 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 MIR1271-201ENST00000408537 86 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 RBMY1KP-201ENST00000423480 476 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.03□□□□□ -1.6
COL5A3P25940 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.03□□□□□ -1.6
COL5A3P25940 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC104619.4-201ENST00000510773 249 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 AC074250.1-201ENST00000511117 192 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 RNU7-143P-201ENST00000516781 65 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms