Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL133325.1-201ENST00000421090 382 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGB1P09429 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGB1P09429 AL161722.2-201ENST00000434731 981 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 HCG17-214ENST00000453558 732 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGB1P09429 CREM-226ENST00000469949 721 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGB1P09429 RPL7P41-201ENST00000485823 957 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 RN7SL814P-201ENST00000487715 300 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 RN7SL346P-201ENST00000491561 294 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 AL049874.2-201ENST00000492636 288 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGB1P09429 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGB1P09429 IGLVIV-53-201ENST00000520107 367 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC6.27□□□□□ -1.41
HMGB1P09429 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGB1P09429 AC135001.1-201ENST00000544546 283 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 RBM22P1-201ENST00000578589 1214 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.27□□□□□ -1.41
HMGB1P09429 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGB1P09429 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGB1P09429 C2orf27A-204ENST00000623058 969 ntBASIC6.27□□□□□ -1.41
HMGB1P09429 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC6.27□□□□□ -1.41
HMGB1P09429 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HMGB1P09429 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGB1P09429 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 AL627171.1-201ENST00000618845 1308 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
HMGB1P09429 FER-202ENST00000438717 1531 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 AC002525.1-201ENST00000624392 1622 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 MIR323A-201ENST00000362199 86 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RNU6-374P-201ENST00000364146 108 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RNA5SP132-201ENST00000364725 118 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 MIR649-201ENST00000384843 97 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 MIR589-201ENST00000385238 99 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 AC009804.1-201ENST00000400949 179 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 OR4K12P-201ENST00000406538 961 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 PCNPP4-201ENST00000414817 517 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 GAPDHP58-201ENST00000438477 1006 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RPL12P11-201ENST00000439970 501 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RPL5P25-201ENST00000441148 775 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 NOP56P2-201ENST00000447491 769 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 GAPDHP39-201ENST00000481866 979 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AL136038.1-201ENST00000497246 351 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
HMGB1P09429 AC006427.1-201ENST00000514359 712 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 RNA5SP135-201ENST00000517019 125 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 NDUFS5P6-201ENST00000529136 295 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGB1P09429 SNORD95-201ENST00000579879 68 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 AL049777.1-201ENST00000622740 518 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGB1P09429 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 AC005261.4-201ENST00000600047 1385 ntBASIC6.26□□□□□ -1.41
HMGB1P09429 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGB1P09429 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGB1P09429 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGB1P09429 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
HMGB1P09429 PABPC1P7-201ENST00000413177 1513 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
HMGB1P09429 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 U3.7-201ENST00000363668 216 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 RNU6-236P-201ENST00000363886 106 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 AL121978.1-201ENST00000402778 359 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AC093655.2-201ENST00000425735 631 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 B3GNT2P1-201ENST00000434960 952 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 CLUHP1-201ENST00000435012 1190 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC6.25□□□□□ -1.41
HMGB1P09429 SETP20-201ENST00000457046 852 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 RN7SL184P-201ENST00000488308 297 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 DYNLL1P6-201ENST00000503440 264 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms