Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXD4P09016 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AL136520.1-201ENST00000600311 1322 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXD4P09016 MIR448-201ENST00000362131 111 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 SNORD51.1-201ENST00000365405 77 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 SNORA70F-201ENST00000384142 135 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 Z98745.1-201ENST00000402553 494 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AL049693.1-201ENST00000402760 611 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AP000580.1-201ENST00000404439 358 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 U3.32-201ENST00000408116 212 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 RN7SKP106-201ENST00000410832 272 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXD4P09016 RSU1P3-201ENST00000412878 835 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC013429.2-201ENST00000418798 781 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXD4P09016 AC069277.2-201ENST00000454211 432 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AL133244.1-201ENST00000456007 258 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXD4P09016 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXD4P09016 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 RPL12P20-201ENST00000475538 479 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 RPS6P4-201ENST00000494693 758 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXD4P09016 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXD4P09016 RNU6-889P-201ENST00000517189 103 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXD4P09016 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXD4P09016 OR8X1P-201ENST00000534542 869 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 PDCD5P1-201ENST00000543528 309 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AL110118.1-201ENST00000553543 400 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 RPL21P7-201ENST00000557463 483 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXD4P09016 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXD4P09016 AC106785.3-201ENST00000564064 847 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 MIR4277-201ENST00000578298 84 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXD4P09016 MIR5699-201ENST00000578903 90 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 MIMT1-201ENST00000597105 1050 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AL133247.2-201ENST00000603236 482 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC011453.2-201ENST00000603737 729 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXD4P09016 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXD4P09016 AL445493.3-201ENST00000619568 477 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC011815.3-201ENST00000624194 473 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 AC055839.1-201ENST00000634467 498 ntBASIC4.29□□□□□ -1.72
HOXD4P09016 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXD4P09016 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXD4P09016 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXD4P09016 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXD4P09016 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXD4P09016 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
HOXD4P09016 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXD4P09016 MAPK10-320ENST00000641462 6696 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXD4P09016 RNA5SP502-201ENST00000362694 119 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 SNORD113.2-201ENST00000364166 89 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 GCNT6-201ENST00000379591 934 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 MIR195-201ENST00000385194 87 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXD4P09016 AL034403.1-201ENST00000399414 885 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 GAPDHP49-201ENST00000421421 961 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 MTND4P24-201ENST00000424002 397 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXD4P09016 RSL24D1P6-201ENST00000426934 401 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 RPL23AP4-201ENST00000427757 463 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 MTND6P18-201ENST00000439477 513 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 Z99127.2-201ENST00000441426 334 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 XKRY2-201ENST00000442362 1093 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 H2AFZP5-201ENST00000446960 382 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AL157884.3-201ENST00000448273 1184 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 NPM1P39-201ENST00000449818 867 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AC010733.1-201ENST00000451515 401 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 CCDC75P1-201ENST00000469247 791 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXD4P09016 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms