Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MAPK10-304ENST00000641341 3984 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AL450326.2-201ENST00000421913 1962 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 RPL26P29-201ENST00000415623 438 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC069213.2-201ENST00000420238 366 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RAD23BP1-201ENST00000421404 1227 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AL590609.2-201ENST00000421430 368 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RPL23AP1-201ENST00000428990 471 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 MTCYBP12-201ENST00000440559 1134 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 CLIC4P1-201ENST00000453177 535 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 METTL15P1-201ENST00000481421 1045 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RN7SL205P-201ENST00000490174 284 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC111000.3-201ENST00000508057 576 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC108157.1-201ENST00000510511 539 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC093770.1-201ENST00000511559 571 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RN7SKP92-201ENST00000517266 244 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 CR383656.6-201ENST00000550518 394 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 ADAD1P2-201ENST00000588476 646 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AL133247.2-201ENST00000603236 482 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC020658.4-201ENST00000613987 684 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RN7SL722P-201ENST00000617780 284 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 RN7SL565P-201ENST00000618246 284 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AP000346.3-201ENST00000622821 210 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 LINC00622-201ENST00000562811 1570 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AC027290.2-201ENST00000623210 18662 ntBASIC4.51□□□□□ -1.69
VPS35Q96QK1 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 SNORA27.3-201ENST00000364937 134 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 RNA5SP332-201ENST00000391063 115 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AL589655.1-201ENST00000405398 482 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 FCF1P5-201ENST00000406490 482 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC048351.1-201ENST00000420064 602 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 RPL21P91-201ENST00000429231 479 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 RPL23AP93-201ENST00000440847 484 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 ARL2BPP10-201ENST00000446487 531 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 MTND3P4-201ENST00000453537 303 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC133473.1-201ENST00000455173 299 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 RN7SL738P-201ENST00000470264 297 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 RPS6P4-201ENST00000494693 758 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AK3P4-201ENST00000504283 583 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC084783.1-201ENST00000565846 910 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC091178.1-203ENST00000584586 279 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 BPIFA4P-203ENST00000603168 689 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC115286.1-201ENST00000604298 434 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 AL672167.1-203ENST00000641299 2975 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS35Q96QK1 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
VPS35Q96QK1 AC010329.2-201ENST00000595195 2737 ntBASIC4.5□□□□□ -1.69
VPS35Q96QK1 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms