Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP41Q3LFD5 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP41Q3LFD5 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP41Q3LFD5 RPL32P3-201ENST00000359025 275 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP41Q3LFD5 RNU6-354P-201ENST00000383862 107 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 RNU6-610P-201ENST00000384264 107 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 MIR129-1-201ENST00000384972 72 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 RNA5SP397-201ENST00000391323 118 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 RN7SKP267-201ENST00000410381 285 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 P2RY10P2-201ENST00000416730 913 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 PNRC2P1-201ENST00000423940 420 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL162591.2-201ENST00000449634 317 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 MTATP6P14-201ENST00000455189 673 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 RN7SL652P-201ENST00000577769 300 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC026979.4-201ENST00000606555 645 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC021851.1-201ENST00000608537 1082 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC245100.7-201ENST00000609678 442 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 RMST_10.1-201ENST00000616309 154 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 TMEM30CP-203ENST00000637814 1035 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL445984.1-201ENST00000637834 659 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AC119674.1-212ENST00000641155 993 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP41Q3LFD5 SOCS5P3-201ENST00000425115 1576 ntBASIC5.08□□□□□ -1.6
USP41Q3LFD5 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.08□□□□□ -1.6
USP41Q3LFD5 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RNU6-532P-201ENST00000384318 107 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 RNU1-82P-201ENST00000390851 165 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL591848.1-201ENST00000413092 322 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 RPL36AP10-201ENST00000421785 322 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 OR6K4P-201ENST00000423179 955 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RPL12P28-201ENST00000430852 489 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL035458.1-201ENST00000433096 585 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC037198.2-201ENST00000478845 733 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RPL21P47-201ENST00000483696 477 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 HAUS1P1-201ENST00000505275 832 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RNU6-415P-201ENST00000516252 97 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AP000916.1-201ENST00000533869 835 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 MIR4675-201ENST00000577898 77 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 MIR4277-201ENST00000578298 84 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AL049844.2-201ENST00000604280 628 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC016597.2-201ENST00000613256 341 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC004808.1-201ENST00000627671 721 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 TTC39DP-201ENST00000416781 1688 ntBASIC5.07□□□□□ -1.6
USP41Q3LFD5 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
USP41Q3LFD5 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USP41Q3LFD5 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.06□□□□□ -1.6
USP41Q3LFD5 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
USP41Q3LFD5 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
USP41Q3LFD5 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 AL137100.1-201ENST00000556703 1620 ntBASIC5.06□□□□□ -1.6
USP41Q3LFD5 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.06□□□□□ -1.6
USP41Q3LFD5 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP41Q3LFD5 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP41Q3LFD5 MIR142-201ENST00000384835 87 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms