Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL592293.2-201ENST00000422292 996 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 PPIAP13-201ENST00000434706 478 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 UBE2V1P3-201ENST00000439651 417 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 RPL23AP24-201ENST00000458203 385 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 TPT1P1-201ENST00000458495 518 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 RNA5SP103-201ENST00000459503 118 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 NIP7P2-201ENST00000485801 544 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC108471.1-201ENST00000513977 287 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 RNA5SP497-201ENST00000516081 97 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC009643.1-201ENST00000532030 391 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC068993.1-201ENST00000546724 589 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC027455.1-201ENST00000574104 594 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AL137072.1-201ENST00000603444 466 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 AL355802.4-201ENST00000607635 548 ntBASIC4.49□□□□□ -1.69
LHX3Q9UBR4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.49□□□□□ -1.69
LHX3Q9UBR4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 MAPK10-304ENST00000641341 3984 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 OR5P1P-201ENST00000299512 925 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 SNORD115-48-201ENST00000364764 76 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 SNORA74C-2-201ENST00000411179 201 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC016397.1-201ENST00000412463 242 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC016712.1-201ENST00000431088 378 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC114495.1-201ENST00000441274 436 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 EIF2S2P2-201ENST00000447161 982 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 DDX39BP2-208ENST00000453923 258 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 RN7SL98P-201ENST00000462271 300 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC011276.1-201ENST00000469688 323 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC010476.1-201ENST00000519111 851 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC021483.2-201ENST00000567415 758 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AF230666.2-201ENST00000602328 725 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AL160290.3-201ENST00000604869 165 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC012557.1-201ENST00000607115 611 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AL035461.2-201ENST00000619201 524 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AL356490.1-201ENST00000623079 479 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.48□□□□□ -1.69
LHX3Q9UBR4 AC090017.1-201ENST00000548612 1779 ntBASIC4.48□□□□□ -1.69
LHX3Q9UBR4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC126323.6-202ENST00000568092 3511 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 FAM3C2-201ENST00000312214 681 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 MIR331-201ENST00000362302 94 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 MIR3065-201ENST00000390137 79 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms