Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AL590609.2-201ENST00000421430 368 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AGGF1P3-201ENST00000493675 1213 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 FAP-203ENST00000443424 2598 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 SNORA3.3-201ENST00000408712 125 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 CYCSP4-201ENST00000429682 331 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC090686.1-201ENST00000481577 749 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC097462.2-201ENST00000504623 481 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 SCARNA15.3-201ENST00000626315 122 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 SCARNA4.1-201ENST00000628597 123 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 NACA3P-201ENST00000359690 648 ntBASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS13AQ96RL7 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 RPL36AP13-201ENST00000457490 317 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 RPS27AP1-201ENST00000475545 471 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 RN7SL809P-201ENST00000482040 297 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC104619.4-201ENST00000510773 249 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 Y_RNA.673-201ENST00000516306 88 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AL160290.3-201ENST00000604869 165 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AL442128.2-201ENST00000620246 1824 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 DMD-228ENST00000541735 7080 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC020914.6-201ENST00000594327 272 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AP002360.3-201ENST00000607673 710 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC022417.1-201ENST00000624768 1303 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AP004289.2-201ENST00000444413 1457 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 MIR3945-201ENST00000581853 98 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AC125257.1-201ENST00000560400 2930 ntBASIC3.94□□□□□ -1.78
VPS13AQ96RL7 AP001273.1-201ENST00000624493 3152 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RNA5SP120-201ENST00000410900 112 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RNA5SP179-201ENST00000517284 121 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 SCARNA15-201ENST00000607520 4325 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AC093591.2-201ENST00000565254 3843 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 SOD2P1-201ENST00000396543 562 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AC007738.1-201ENST00000413892 348 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RPL7P44-201ENST00000424827 742 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RPL7P23-201ENST00000493874 747 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 CASC19-203ENST00000523510 575 ntTSL 3 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms