Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.39□□□□□ -1.71
SOX3P41225 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 AL358913.1-201ENST00000554342 121 ntBASIC4.39□□□□□ -1.71
SOX3P41225 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 MIR4330-201ENST00000579077 105 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AC025175.1-201ENST00000606482 759 ntBASIC4.39□□□□□ -1.71
SOX3P41225 MIR6780A-201ENST00000615089 68 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AC016957.2-201ENST00000616998 848 ntBASIC4.39□□□□□ -1.71
SOX3P41225 RN7SL722P-201ENST00000617780 284 ntBASIC4.39□□□□□ -1.71
SOX3P41225 RN7SL565P-201ENST00000618246 284 ntBASIC4.39□□□□□ -1.71
SOX3P41225 MIR7703-201ENST00000620784 77 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.39□□□□□ -1.71
SOX3P41225 TMEM30CP-203ENST00000637814 1035 ntBASIC4.39□□□□□ -1.71
SOX3P41225 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 RNA5SP505-201ENST00000364748 108 ntBASIC4.38□□□□□ -1.71
SOX3P41225 MIR192-201ENST00000384915 110 ntBASIC4.38□□□□□ -1.71
SOX3P41225 RPS16P5-201ENST00000406501 404 ntBASIC4.38□□□□□ -1.71
SOX3P41225 XKRYP4-201ENST00000414395 483 ntBASIC4.38□□□□□ -1.71
SOX3P41225 MTND2P9-201ENST00000422293 931 ntBASIC4.38□□□□□ -1.71
SOX3P41225 CYCSP11-201ENST00000436426 315 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC004938.1-201ENST00000438468 308 ntBASIC4.38□□□□□ -1.71
SOX3P41225 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 XKRYP5-201ENST00000449659 483 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.38□□□□□ -1.71
SOX3P41225 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.38□□□□□ -1.71
SOX3P41225 AC005008.1-201ENST00000456151 612 ntBASIC4.38□□□□□ -1.71
SOX3P41225 HSPE1P22-201ENST00000456856 327 ntBASIC4.38□□□□□ -1.71
SOX3P41225 RN7SL354P-201ENST00000469282 294 ntBASIC4.38□□□□□ -1.71
SOX3P41225 RN7SL738P-201ENST00000470264 297 ntBASIC4.38□□□□□ -1.71
SOX3P41225 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 RPL12P20-201ENST00000475538 479 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC037198.2-201ENST00000478845 733 ntBASIC4.38□□□□□ -1.71
SOX3P41225 SETP6-201ENST00000479329 568 ntBASIC4.38□□□□□ -1.71
SOX3P41225 RPL23AP72-201ENST00000492447 435 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 MTATP6P9-201ENST00000515039 680 ntBASIC4.38□□□□□ -1.71
SOX3P41225 RNU6-1308P-201ENST00000516817 103 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.38□□□□□ -1.71
SOX3P41225 GSTP1P1-201ENST00000548078 319 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 AL110118.1-201ENST00000553543 400 ntBASIC4.38□□□□□ -1.71
SOX3P41225 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 AL049870.4-201ENST00000555741 486 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.38□□□□□ -1.71
SOX3P41225 AC079075.1-201ENST00000559543 878 ntBASIC4.38□□□□□ -1.71
SOX3P41225 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 AC026979.4-201ENST00000606555 645 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC012557.1-201ENST00000607115 611 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AC112503.2-201ENST00000609005 552 ntBASIC4.38□□□□□ -1.71
SOX3P41225 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 AL596275.2-204ENST00000641628 552 ntBASIC4.38□□□□□ -1.71
SOX3P41225 AL596275.2-206ENST00000641957 626 ntBASIC4.38□□□□□ -1.71
SOX3P41225 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SOX3P41225 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 MTND4P9-201ENST00000507819 1346 ntBASIC4.38□□□□□ -1.71
SOX3P41225 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SOX3P41225 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
SOX3P41225 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 MTND5P11-201ENST00000511037 1812 ntBASIC4.37□□□□□ -1.71
SOX3P41225 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 MTCO1P15-201ENST00000529569 1526 ntBASIC4.37□□□□□ -1.71
SOX3P41225 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 RLIMP2-201ENST00000427891 1563 ntBASIC4.37□□□□□ -1.71
SOX3P41225 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 AC079741.1-201ENST00000321498 212 ntBASIC4.37□□□□□ -1.71
SOX3P41225 RNU6-398P-201ENST00000384143 109 ntBASIC4.37□□□□□ -1.71
SOX3P41225 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SOX3P41225 RN7SKP106-201ENST00000410832 272 ntBASIC4.37□□□□□ -1.71
SOX3P41225 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.37□□□□□ -1.71
SOX3P41225 AL138878.2-201ENST00000440581 1241 ntBASIC4.37□□□□□ -1.71
SOX3P41225 ARL4AP3-201ENST00000441452 574 ntBASIC4.37□□□□□ -1.71
SOX3P41225 RNF2P1-201ENST00000442955 1010 ntBASIC4.37□□□□□ -1.71
SOX3P41225 RPS27P5-201ENST00000444247 244 ntBASIC4.37□□□□□ -1.71
SOX3P41225 HMGN1P5-201ENST00000448591 263 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 AL513533.1-201ENST00000453728 415 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms