Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
COL6A3P12111 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.17□□□□□ -1.74
COL6A3P12111 AC096644.3-201ENST00000416788 338 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 RPL23AP46-201ENST00000438548 490 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 AL671855.1-201ENST00000446875 1203 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 RPL7P22-201ENST00000466005 733 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.17□□□□□ -1.74
COL6A3P12111 NCAPGP2-201ENST00000557911 754 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 MIR5680-201ENST00000577577 84 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 AC007998.5-201ENST00000622938 237 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 AC092376.2-201ENST00000622621 4116 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
COL6A3P12111 AC097461.1-201ENST00000568928 2821 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 VPS35P1-201ENST00000563400 1518 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
COL6A3P12111 NXPH1-205ENST00000602349 1953 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
COL6A3P12111 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.17□□□□□ -1.74
COL6A3P12111 AC068790.5-201ENST00000602741 355 ntBASIC4.17□□□□□ -1.74
COL6A3P12111 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.17□□□□□ -1.74
COL6A3P12111 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
COL6A3P12111 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.17□□□□□ -1.74
COL6A3P12111 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 TCEA1P2-201ENST00000420496 906 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AL133162.1-201ENST00000463228 453 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 HMGN1P11-201ENST00000508668 303 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC091516.1-201ENST00000549191 703 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 CYCSP40-201ENST00000575927 294 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AP001267.4-201ENST00000602598 545 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AC073530.2-201ENST00000623987 261 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
COL6A3P12111 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.16□□□□□ -1.74
COL6A3P12111 AL161912.2-201ENST00000565707 3007 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL6A3P12111 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC138409.2-202ENST00000507274 458 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 PHBP14-201ENST00000512887 367 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 SUMO2P19-201ENST00000518920 295 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 CR383656.14-201ENST00000551951 406 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
COL6A3P12111 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
COL6A3P12111 RNA5SP51-201ENST00000364750 119 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 BX276092.6-201ENST00000430476 250 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AC099670.2-201ENST00000435130 321 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 Z75741.1-201ENST00000446793 314 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 BX276092.8-201ENST00000455722 250 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 BTF3P5-201ENST00000457252 467 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC132942.1-201ENST00000486753 483 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.16□□□□□ -1.74
COL6A3P12111 AC093388.1-201ENST00000609166 430 ntBASIC4.16□□□□□ -1.74
COL6A3P12111 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.16□□□□□ -1.74
COL6A3P12111 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A3P12111 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC4.15□□□□□ -1.74
COL6A3P12111 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.15□□□□□ -1.74
COL6A3P12111 AP000432.2-201ENST00000624164 2048 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A3P12111 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A3P12111 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A3P12111 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
COL6A3P12111 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.15□□□□□ -1.74
COL6A3P12111 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A3P12111 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.74
COL6A3P12111 RNU6-7-201ENST00000364784 107 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 RNU6-8-201ENST00000365467 107 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 MIR1261-201ENST00000408659 82 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 HSFY4P-201ENST00000415994 1181 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 RPS3AP46-201ENST00000448352 682 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.15□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms