Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 Z85996.1-201ENST00000494644 937 ntBASIC20.34■□□□□ 0.85
USP3Q9Y6I4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 AL160286.2-201ENST00000567150 934 ntBASIC20.34■□□□□ 0.85
USP3Q9Y6I4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.34■□□□□ 0.85
USP3Q9Y6I4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 FSCN1P1-201ENST00000568912 1481 ntBASIC20.33■□□□□ 0.85
USP3Q9Y6I4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 B3GAT3P1-201ENST00000471720 806 ntBASIC20.33■□□□□ 0.85
USP3Q9Y6I4 AC011506.1-201ENST00000474329 610 ntBASIC20.33■□□□□ 0.85
USP3Q9Y6I4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.33■□□□□ 0.85
USP3Q9Y6I4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
USP3Q9Y6I4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 LINC01465-201ENST00000408887 1940 ntBASIC20.32■□□□□ 0.84
USP3Q9Y6I4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 MIR6786-201ENST00000616843 113 ntBASIC20.32■□□□□ 0.84
USP3Q9Y6I4 AC130371.2-201ENST00000619443 611 ntBASIC20.32■□□□□ 0.84
USP3Q9Y6I4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP3Q9Y6I4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 RBM17P1-201ENST00000453646 1190 ntBASIC20.31■□□□□ 0.84
USP3Q9Y6I4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 AC104417.2-201ENST00000562989 1793 ntBASIC20.31■□□□□ 0.84
USP3Q9Y6I4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP3Q9Y6I4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms