Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS13AQ96RL7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 AC116351.2-201ENST00000606540 1585 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 MRPL3P1-201ENST00000400109 1033 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 GUSBP5-202ENST00000510805 1989 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 AL391422.3-201ENST00000603791 2761 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 CA15P1-201ENST00000481698 905 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 MIR2861-201ENST00000636310 90 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 KRT16P4-201ENST00000453883 522 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS13AQ96RL7 AP002414.4-201ENST00000589764 1148 ntBASIC19.26■□□□□ 0.67
VPS13AQ96RL7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 HLA-G-202ENST00000376815 851 ntBASIC19.25■□□□□ 0.67
VPS13AQ96RL7 HLA-G-203ENST00000376818 1127 ntBASIC19.25■□□□□ 0.67
VPS13AQ96RL7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13AQ96RL7 AC079776.4-201ENST00000511039 504 ntBASIC19.25■□□□□ 0.67
VPS13AQ96RL7 AC011498.5-201ENST00000592027 486 ntBASIC19.25■□□□□ 0.67
VPS13AQ96RL7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 IL9RP2-201ENST00000423948 1312 ntBASIC19.24■□□□□ 0.67
VPS13AQ96RL7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VPS13AQ96RL7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 LINC00167-201ENST00000530583 1419 ntBASIC19.23■□□□□ 0.67
VPS13AQ96RL7 PLK5-205ENST00000642079 1969 ntBASIC19.23■□□□□ 0.67
VPS13AQ96RL7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 AF228730.7-201ENST00000641842 219 ntBASIC19.23■□□□□ 0.67
VPS13AQ96RL7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 KRT8P8-201ENST00000434750 1448 ntBASIC19.23■□□□□ 0.67
VPS13AQ96RL7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS13AQ96RL7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms