Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 BX119927.1-201ENST00000636596 1552 ntBASIC21.06■□□□□ 0.96
LRCH3Q96II8 AC026310.3-201ENST00000625186 2373 ntBASIC21.05■□□□□ 0.96
LRCH3Q96II8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 AP003041.3-201ENST00000527151 707 ntBASIC21.05■□□□□ 0.96
LRCH3Q96II8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 AL121672.3-201ENST00000608644 468 ntBASIC21.05■□□□□ 0.96
LRCH3Q96II8 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.05■□□□□ 0.96
LRCH3Q96II8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRCH3Q96II8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRCH3Q96II8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.04■□□□□ 0.96
LRCH3Q96II8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 AP000523.1-201ENST00000398242 1049 ntBASIC21.03■□□□□ 0.96
LRCH3Q96II8 TSPY12P-201ENST00000421279 868 ntBASIC21.03■□□□□ 0.96
LRCH3Q96II8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRCH3Q96II8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.03■□□□□ 0.96
LRCH3Q96II8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 HBZP1-201ENST00000354915 429 ntBASIC21.02■□□□□ 0.96
LRCH3Q96II8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 AC011498.5-201ENST00000592027 486 ntBASIC21.02■□□□□ 0.96
LRCH3Q96II8 AL139424.1-201ENST00000607572 797 ntBASIC21.02■□□□□ 0.96
LRCH3Q96II8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRCH3Q96II8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 FAM99A-202ENST00000538190 1989 ntBASIC21.02■□□□□ 0.96
LRCH3Q96II8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.02■□□□□ 0.96
LRCH3Q96II8 KRT8P36-201ENST00000489121 1440 ntBASIC21.02■□□□□ 0.96
LRCH3Q96II8 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
LRCH3Q96II8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.02■□□□□ 0.95
LRCH3Q96II8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.02■□□□□ 0.95
LRCH3Q96II8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
LRCH3Q96II8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms