Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHROOM3Q8TF72 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 LINC01465-201ENST00000408887 1940 ntBASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 AL032819.2-201ENST00000624543 2162 ntBASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.82■□□□□ 0.76
SHROOM3Q8TF72 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 NIFKP9-201ENST00000419265 221 ntBASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.81■□□□□ 0.76
SHROOM3Q8TF72 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 KRT16P1-201ENST00000399124 1418 ntBASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 PKD1P6-201ENST00000343738 4769 ntBASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.8■□□□□ 0.76
SHROOM3Q8TF72 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 SNORA78-201ENST00000459373 127 ntBASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms