Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 AC112907.2-201ENST00000448639 330 ntBASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 ZNF444P1-201ENST00000559497 298 ntBASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC44A3Q8N4M1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 AL691432.3-201ENST00000621860 400 ntBASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SLC44A3Q8N4M1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 AC083849.1-201ENST00000615227 514 ntBASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 HYMAI.1-201ENST00000620949 238 ntBASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC44A3Q8N4M1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 LINC01465-201ENST00000408887 1940 ntBASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 AP000523.1-201ENST00000398242 1049 ntBASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 AC012313.10-201ENST00000623509 926 ntBASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 SMG8-203ENST00000578922 2178 ntBASIC19.9■□□□□ 0.78
SLC44A3Q8N4M1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.78
SLC44A3Q8N4M1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 KRT8P41-201ENST00000533985 1514 ntBASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.89■□□□□ 0.77
SLC44A3Q8N4M1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms