Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PKNOX1P55347 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.04■□□□□ 0.64
PKNOX1P55347 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.03■□□□□ 0.64
PKNOX1P55347 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
PKNOX1P55347 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.03■□□□□ 0.64
PKNOX1P55347 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.03■□□□□ 0.64
PKNOX1P55347 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.03■□□□□ 0.64
PKNOX1P55347 AC026185.1-201ENST00000445748 174 ntBASIC19.03■□□□□ 0.64
PKNOX1P55347 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.03■□□□□ 0.64
PKNOX1P55347 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
PKNOX1P55347 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.03■□□□□ 0.64
PKNOX1P55347 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PKNOX1P55347 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.02■□□□□ 0.64
PKNOX1P55347 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.02■□□□□ 0.64
PKNOX1P55347 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
PKNOX1P55347 AL390719.1-204ENST00000412397 1219 ntBASIC19.02■□□□□ 0.64
PKNOX1P55347 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.02■□□□□ 0.64
PKNOX1P55347 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.02■□□□□ 0.64
PKNOX1P55347 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.02■□□□□ 0.64
PKNOX1P55347 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PKNOX1P55347 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PKNOX1P55347 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.63
PKNOX1P55347 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.02■□□□□ 0.63
PKNOX1P55347 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PKNOX1P55347 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PKNOX1P55347 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
PKNOX1P55347 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.01■□□□□ 0.63
PKNOX1P55347 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
PKNOX1P55347 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
PKNOX1P55347 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.01■□□□□ 0.63
PKNOX1P55347 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 TFP1-202ENST00000475455 1573 ntBASIC19.01■□□□□ 0.63
PKNOX1P55347 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
PKNOX1P55347 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
PKNOX1P55347 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 MIR663A-201ENST00000385250 93 ntBASIC19■□□□□ 0.63
PKNOX1P55347 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19■□□□□ 0.63
PKNOX1P55347 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19■□□□□ 0.63
PKNOX1P55347 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19■□□□□ 0.63
PKNOX1P55347 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 AC005829.2-201ENST00000571422 1056 ntBASIC19■□□□□ 0.63
PKNOX1P55347 IKBKGP1-201ENST00000612193 1073 ntBASIC19■□□□□ 0.63
PKNOX1P55347 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PKNOX1P55347 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19■□□□□ 0.63
PKNOX1P55347 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PKNOX1P55347 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19■□□□□ 0.63
PKNOX1P55347 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 LETM1P2-201ENST00000597330 2178 ntBASIC18.99■□□□□ 0.63
PKNOX1P55347 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
PKNOX1P55347 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PKNOX1P55347 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PKNOX1P55347 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 AC138932.1-201ENST00000534164 6830 ntBASIC18.99■□□□□ 0.63
PKNOX1P55347 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms