Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BDNFP23560 MIR1238-201ENST00000408483 83 ntBASIC20.51■□□□□ 0.87
BDNFP23560 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
BDNFP23560 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.51■□□□□ 0.87
BDNFP23560 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.51■□□□□ 0.87
BDNFP23560 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BDNFP23560 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
BDNFP23560 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
BDNFP23560 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.5■□□□□ 0.87
BDNFP23560 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.5■□□□□ 0.87
BDNFP23560 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 AL390955.1-201ENST00000428694 934 ntBASIC20.5■□□□□ 0.87
BDNFP23560 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.5■□□□□ 0.87
BDNFP23560 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 RCC2P6-201ENST00000526625 1557 ntBASIC20.5■□□□□ 0.87
BDNFP23560 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.5■□□□□ 0.87
BDNFP23560 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BDNFP23560 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.5■□□□□ 0.87
BDNFP23560 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.49■□□□□ 0.87
BDNFP23560 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
BDNFP23560 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
BDNFP23560 AL160286.2-201ENST00000567150 934 ntBASIC20.49■□□□□ 0.87
BDNFP23560 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.49■□□□□ 0.87
BDNFP23560 AC133561.5-201ENST00000635547 218 ntBASIC20.49■□□□□ 0.87
BDNFP23560 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 KRT8P9-201ENST00000558927 1449 ntBASIC20.49■□□□□ 0.87
BDNFP23560 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
BDNFP23560 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BDNFP23560 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.49■□□□□ 0.87
BDNFP23560 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.48■□□□□ 0.87
BDNFP23560 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 AC008040.2-201ENST00000461049 708 ntBASIC20.48■□□□□ 0.87
BDNFP23560 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 Z85996.1-201ENST00000494644 937 ntBASIC20.48■□□□□ 0.87
BDNFP23560 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 AC011298.2-201ENST00000617989 482 ntBASIC20.48■□□□□ 0.87
BDNFP23560 AC130371.2-201ENST00000619443 611 ntBASIC20.48■□□□□ 0.87
BDNFP23560 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.48■□□□□ 0.87
BDNFP23560 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BDNFP23560 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
BDNFP23560 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.47■□□□□ 0.87
BDNFP23560 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.47■□□□□ 0.87
BDNFP23560 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms