Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.6■□□□□ 0.89
RB1P06400 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.59■□□□□ 0.89
RB1P06400 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.59■□□□□ 0.89
RB1P06400 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.59■□□□□ 0.89
RB1P06400 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.59■□□□□ 0.89
RB1P06400 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.59■□□□□ 0.89
RB1P06400 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.59■□□□□ 0.89
RB1P06400 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RB1P06400 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.59■□□□□ 0.89
RB1P06400 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.59■□□□□ 0.89
RB1P06400 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RB1P06400 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RB1P06400 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
RB1P06400 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.58■□□□□ 0.89
RB1P06400 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RB1P06400 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RB1P06400 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RB1P06400 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.58■□□□□ 0.89
RB1P06400 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.58■□□□□ 0.89
RB1P06400 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.58■□□□□ 0.89
RB1P06400 LINC01311-201ENST00000565162 1445 ntBASIC20.58■□□□□ 0.88
RB1P06400 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RB1P06400 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.58■□□□□ 0.88
RB1P06400 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RB1P06400 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RB1P06400 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
RB1P06400 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RB1P06400 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.58■□□□□ 0.88
RB1P06400 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.57■□□□□ 0.88
RB1P06400 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.57■□□□□ 0.88
RB1P06400 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.57■□□□□ 0.88
RB1P06400 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.57■□□□□ 0.88
RB1P06400 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.57■□□□□ 0.88
RB1P06400 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 BX119927.1-201ENST00000636596 1552 ntBASIC20.57■□□□□ 0.88
RB1P06400 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.57■□□□□ 0.88
RB1P06400 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RB1P06400 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RB1P06400 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.56■□□□□ 0.88
RB1P06400 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.56■□□□□ 0.88
RB1P06400 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 GCSHP2-201ENST00000560971 527 ntBASIC20.56■□□□□ 0.88
RB1P06400 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.56■□□□□ 0.88
RB1P06400 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.56■□□□□ 0.88
RB1P06400 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.56■□□□□ 0.88
RB1P06400 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RB1P06400 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RB1P06400 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
RB1P06400 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
RB1P06400 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RB1P06400 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
RB1P06400 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms