Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SERPINE4P-201ENST00000554978 281 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 TRAV15-201ENST00000556680 249 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AC017100.2-201ENST00000584628 355 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AC008507.1-201ENST00000587506 734 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AC009027.1-201ENST00000604510 479 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 LSM1P2-201ENST00000604911 322 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 SNX18P12-201ENST00000624821 759 ntBASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
TRIM39Q9HCM9 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 OR52B3P-201ENST00000314715 928 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 EI24P3-201ENST00000399046 1062 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 OR7E101P-201ENST00000400428 513 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 FABP12P1-201ENST00000401911 322 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 NCSTNP1-201ENST00000406229 144 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 GAPDHP42-201ENST00000406848 981 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 Y_RNA.599-201ENST00000410489 109 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AP000534.2-201ENST00000412729 568 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 FCF1P2-201ENST00000415284 583 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC092634.6-201ENST00000418558 192 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 LINC00993-201ENST00000420453 540 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 RPS3P2-201ENST00000421346 701 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 MTCO2P34-201ENST00000421994 607 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 KATNBL1P6-201ENST00000453433 915 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 KLRA1P-201ENST00000503499 986 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC025674.1-201ENST00000507074 324 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 HMGB1P28-201ENST00000507778 552 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 snoU109.6-201ENST00000516831 118 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC239860.2-201ENST00000525886 270 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 HMGN2P36-201ENST00000529541 409 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AGGF1P4-201ENST00000568249 801 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC022146.1-201ENST00000595307 847 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC083899.3-201ENST00000603413 594 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AL031775.1-201ENST00000607014 887 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 DLEU2_1.1-201ENST00000612089 120 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 DLEU2_1.2-201ENST00000614667 120 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC015804.1-201ENST00000622935 435 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC006927.3-201ENST00000638789 384 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC073869.7-201ENST00000640874 297 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC025470.1-201ENST00000510053 2032 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 AC009313.2-201ENST00000417893 1941 ntBASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TRIM39Q9HCM9 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 AC020656.2-201ENST00000613291 5309 ntBASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 RNA5SP500-201ENST00000364486 119 ntBASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 Y_RNA.302-201ENST00000364997 102 ntBASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 RPS3AP2-201ENST00000407190 754 ntBASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 Y_RNA.619-201ENST00000410951 90 ntBASIC5.79□□□□□ -1.48
TRIM39Q9HCM9 RN7SKP29-201ENST00000410957 272 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms