Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
NPAS3Q8IXF0 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 SNORA38B-201ENST00000363524 131 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RNU1-39P-201ENST00000383897 165 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RNA5SP122-201ENST00000384457 108 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RPL7P25-201ENST00000404151 721 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 MIR1305-201ENST00000408300 86 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RN7SKP121-201ENST00000410842 305 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC010385.1-201ENST00000412374 256 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 OR6E1P-201ENST00000414424 923 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AL161722.2-201ENST00000434731 981 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 HMGN1P2-201ENST00000445197 310 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 HMGB3P22-202ENST00000451823 572 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC091564.1-201ENST00000464563 479 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RPS4XP10-201ENST00000465034 731 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RPS20P21-201ENST00000466859 343 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RPS14P8-201ENST00000478778 369 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 OR4T1P-201ENST00000554933 911 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ULK4P1-202ENST00000565174 503 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZNF322P1-201ENST00000568013 1209 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC138915.2-201ENST00000569776 97 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 RN7SL366P-201ENST00000577957 292 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 HMGN1P30-201ENST00000589286 268 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC068790.5-201ENST00000602741 355 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 SMIM12P1-201ENST00000603004 274 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC093635.1-201ENST00000609028 555 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC006840.1-201ENST00000623069 542 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 U6.107-201ENST00000637108 79 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC096992.2-201ENST00000609553 1684 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AC132219.2-201ENST00000624416 2327 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 MTND5P28-201ENST00000438005 1594 ntBASIC6.95□□□□□ -1.3
NPAS3Q8IXF0 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 NCOA4P2-201ENST00000340589 1813 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AL136981.1-203ENST00000451452 3844 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AC015689.2-201ENST00000528172 1738 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RNA5SP433-201ENST00000364491 114 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RNU6-31P-201ENST00000384388 108 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RPL23AP29-201ENST00000397284 453 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AL445529.1-201ENST00000398713 389 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AL583835.1-201ENST00000399570 407 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RNU6-370P-201ENST00000411008 104 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RBMY2KP-201ENST00000418221 992 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RPL7P57-201ENST00000423238 740 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AC139712.2-201ENST00000424302 339 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RPS7P14-201ENST00000426405 583 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AC007679.3-201ENST00000434035 414 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 RPL23AP16-201ENST00000441715 421 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 MIR2053-201ENST00000459295 91 ntBASIC6.94□□□□□ -1.3
NPAS3Q8IXF0 AC021074.2-201ENST00000468434 172 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms