Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 SCARNA15-201ENST00000607520 4325 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 ATP5A1P2-201ENST00000412323 255 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 RN7SKP157-201ENST00000516174 282 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 NPM1P47-201ENST00000560843 856 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AC091167.4-201ENST00000605079 184 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 RNA5SP513-201ENST00000364648 118 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 TCEA1P2-201ENST00000420496 906 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 IGKV2D-19-201ENST00000523346 262 ntBASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13DQ5THJ4 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
VPS13DQ5THJ4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VPS13DQ5THJ4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VPS13DQ5THJ4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VPS13DQ5THJ4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.97
VPS13DQ5THJ4 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 BOLA3P4-201ENST00000418151 400 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC092647.1-201ENST00000420654 287 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC020893.1-201ENST00000502452 580 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC120057.2-201ENST00000571520 271 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC002069.2-201ENST00000603580 883 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 QTRT1P1-201ENST00000604344 1078 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC024023.1-201ENST00000624530 922 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 OR6C71P-202ENST00000641886 1107 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AL161631.1-201ENST00000417933 486 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AL451050.1-201ENST00000450126 415 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 MTND6P6-201ENST00000478031 263 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RPS29P19-201ENST00000479709 171 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AP005264.7-201ENST00000625003 745 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC021242.1-201ENST00000507315 2035 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AP001284.1-201ENST00000528393 2118 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CREM-220ENST00000463314 964 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RPL7P49-201ENST00000471402 708 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 RNU7-143P-201ENST00000516781 65 ntBASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 AC091905.2-201ENST00000623143 306 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 150 ms