Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DHX9P1-201ENST00000436565 3076 ntBASIC4.41□□□□□ -1.7
SOX3P41225 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AL442639.1-201ENST00000625030 1899 ntBASIC4.41□□□□□ -1.7
SOX3P41225 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.4□□□□□ -1.7
SOX3P41225 AC092435.4-201ENST00000623012 4159 ntBASIC4.4□□□□□ -1.7
SOX3P41225 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SOX3P41225 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.4□□□□□ -1.7
SOX3P41225 SMG1P6-201ENST00000532337 2930 ntBASIC4.4□□□□□ -1.7
SOX3P41225 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.4□□□□□ -1.7
SOX3P41225 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SOX3P41225 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SOX3P41225 IL6STP1-201ENST00000346911 1020 ntBASIC4.4□□□□□ -1.71
SOX3P41225 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SOX3P41225 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 RNU1-82P-201ENST00000390851 165 ntBASIC4.4□□□□□ -1.71
SOX3P41225 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 RPL5P19-201ENST00000404228 893 ntBASIC4.4□□□□□ -1.71
SOX3P41225 U3.35-201ENST00000408405 208 ntBASIC4.4□□□□□ -1.71
SOX3P41225 RNU2-17P-201ENST00000410290 190 ntBASIC4.4□□□□□ -1.71
SOX3P41225 RNU4-74P-201ENST00000411280 161 ntBASIC4.4□□□□□ -1.71
SOX3P41225 RPL26P29-201ENST00000415623 438 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AL645608.4-201ENST00000423619 154 ntBASIC4.4□□□□□ -1.71
SOX3P41225 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.4□□□□□ -1.71
SOX3P41225 MRPL50P1-201ENST00000431951 384 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX3P41225 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.4□□□□□ -1.71
SOX3P41225 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX3P41225 TDGF1P1-201ENST00000445734 527 ntBASIC4.4□□□□□ -1.71
SOX3P41225 CLIC4P1-201ENST00000453177 535 ntBASIC4.4□□□□□ -1.71
SOX3P41225 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX3P41225 AC107015.1-201ENST00000466902 747 ntBASIC4.4□□□□□ -1.71
SOX3P41225 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
SOX3P41225 CDH12P2-201ENST00000504393 298 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AC121161.1-201ENST00000510606 652 ntBASIC4.4□□□□□ -1.71
SOX3P41225 RNU2-30P-201ENST00000516209 141 ntBASIC4.4□□□□□ -1.71
SOX3P41225 RNU1-6P-201ENST00000516290 144 ntBASIC4.4□□□□□ -1.71
SOX3P41225 IGKV1-32-201ENST00000519290 311 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX3P41225 AC068339.2-201ENST00000534395 618 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX3P41225 CR383656.6-201ENST00000550518 394 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX3P41225 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.4□□□□□ -1.71
SOX3P41225 AC104072.1-201ENST00000568817 668 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AL391834.1-201ENST00000609609 560 ntBASIC4.4□□□□□ -1.71
SOX3P41225 MIR6748-201ENST00000610433 71 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AC018926.1-201ENST00000616335 435 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AL356274.1-201ENST00000617064 410 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AL138955.1-201ENST00000622881 1040 ntBASIC4.4□□□□□ -1.71
SOX3P41225 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.4□□□□□ -1.71
SOX3P41225 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.4□□□□□ -1.71
SOX3P41225 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX3P41225 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.4□□□□□ -1.71
SOX3P41225 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX3P41225 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
SOX3P41225 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX3P41225 SCN1A-220ENST00000641603 12506 ntBASIC4.39□□□□□ -1.71
SOX3P41225 RBPJP2-201ENST00000618187 1444 ntBASIC4.39□□□□□ -1.71
SOX3P41225 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 MIR16-2-201ENST00000362117 81 ntBASIC4.39□□□□□ -1.71
SOX3P41225 HMGB1P10-201ENST00000395823 563 ntBASIC4.39□□□□□ -1.71
SOX3P41225 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 AL358176.3-201ENST00000420757 454 ntBASIC4.39□□□□□ -1.71
SOX3P41225 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 VN1R42P-201ENST00000424651 344 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AC092447.2-201ENST00000435487 669 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 AC016831.4-201ENST00000438302 307 ntBASIC4.39□□□□□ -1.71
SOX3P41225 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 RPS29P33-201ENST00000456717 146 ntBASIC4.39□□□□□ -1.71
SOX3P41225 PSMC1P13-201ENST00000458195 985 ntBASIC4.39□□□□□ -1.71
SOX3P41225 RPL32P14-201ENST00000463196 378 ntBASIC4.39□□□□□ -1.71
SOX3P41225 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.39□□□□□ -1.71
SOX3P41225 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.39□□□□□ -1.71
SOX3P41225 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 AP006289.1-201ENST00000538089 277 ntBASIC4.39□□□□□ -1.71
SOX3P41225 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SOX3P41225 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.39□□□□□ -1.71
SOX3P41225 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms