Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC2.53□□□□□ -2
APOBP04114 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
APOBP04114 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.53□□□□□ -2
APOBP04114 RPS3AP6-201ENST00000484430 795 ntBASIC2.53□□□□□ -2
APOBP04114 AC069304.1-201ENST00000491593 704 ntBASIC2.53□□□□□ -2
APOBP04114 RN7SL812P-201ENST00000493791 279 ntBASIC2.53□□□□□ -2
APOBP04114 UBE2CP3-201ENST00000502715 450 ntBASIC2.53□□□□□ -2
APOBP04114 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC2.53□□□□□ -2
APOBP04114 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.53□□□□□ -2
APOBP04114 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 MIR4672-201ENST00000583126 81 ntBASIC2.53□□□□□ -2
APOBP04114 AC068790.5-201ENST00000602741 355 ntBASIC2.53□□□□□ -2
APOBP04114 AC083837.1-201ENST00000565297 2994 ntBASIC2.53□□□□□ -2
APOBP04114 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
APOBP04114 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2.01
APOBP04114 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2.01
APOBP04114 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2.01
APOBP04114 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
APOBP04114 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.53□□□□□ -2.01
APOBP04114 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 CASC19-203ENST00000523510 575 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 CA1-225ENST00000626824 2405 ntTSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 RNU1-33P-201ENST00000364249 162 ntBASIC2.52□□□□□ -2.01
APOBP04114 MTND4LP20-201ENST00000402379 270 ntBASIC2.52□□□□□ -2.01
APOBP04114 RPS21P8-201ENST00000413365 247 ntBASIC2.52□□□□□ -2.01
APOBP04114 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AC025518.1-201ENST00000479856 347 ntBASIC2.52□□□□□ -2.01
APOBP04114 RNA5SP230-201ENST00000517039 122 ntBASIC2.52□□□□□ -2.01
APOBP04114 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC2.52□□□□□ -2.01
APOBP04114 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 GTF2IP8-201ENST00000560687 584 ntBASIC2.52□□□□□ -2.01
APOBP04114 AC027216.1-201ENST00000577726 685 ntBASIC2.52□□□□□ -2.01
APOBP04114 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AP001284.1-201ENST00000528393 2118 ntBASIC2.52□□□□□ -2.01
APOBP04114 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
APOBP04114 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 SNORA5.1-201ENST00000384275 131 ntBASIC2.52□□□□□ -2.01
APOBP04114 AL035423.1-201ENST00000420331 213 ntBASIC2.52□□□□□ -2.01
APOBP04114 RPS4XP18-201ENST00000495480 763 ntBASIC2.52□□□□□ -2.01
APOBP04114 AC004069.2-201ENST00000505438 1114 ntBASIC2.52□□□□□ -2.01
APOBP04114 NPM1P47-201ENST00000560843 856 ntBASIC2.52□□□□□ -2.01
APOBP04114 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AL731532.2-201ENST00000623542 1953 ntBASIC2.52□□□□□ -2.01
APOBP04114 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 CCDC162P-202ENST00000368966 6751 ntBASIC2.52□□□□□ -2.01
APOBP04114 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC2.52□□□□□ -2.01
APOBP04114 BX510359.1-201ENST00000456973 237 ntBASIC2.52□□□□□ -2.01
APOBP04114 AL049874.2-201ENST00000492636 288 ntBASIC2.52□□□□□ -2.01
APOBP04114 AC005726.1-201ENST00000494679 427 ntBASIC2.52□□□□□ -2.01
APOBP04114 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 PTS-202ENST00000524931 696 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.52□□□□□ -2.01
APOBP04114 AC091167.4-201ENST00000605079 184 ntBASIC2.52□□□□□ -2.01
APOBP04114 AL353726.1-201ENST00000614041 1000 ntBASIC2.52□□□□□ -2.01
APOBP04114 SCARNA15.3-201ENST00000626315 122 ntBASIC2.52□□□□□ -2.01
APOBP04114 SCARNA4.1-201ENST00000628597 123 ntBASIC2.52□□□□□ -2.01
APOBP04114 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC2.52□□□□□ -2.01
APOBP04114 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
APOBP04114 AC010401.2-201ENST00000575137 4934 ntBASIC2.51□□□□□ -2.01
APOBP04114 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC2.51□□□□□ -2.01
APOBP04114 NAP1L4P1-201ENST00000319092 1157 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms