Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A1P02462 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
COL4A1P02462 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A1P02462 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL4A1P02462 RNA5SP119-201ENST00000362715 117 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 AL672167.2-201ENST00000377164 879 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 U1.1-201ENST00000384101 164 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 PTMAP2-201ENST00000397627 327 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 HMGB3P19-201ENST00000403971 560 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.95□□□□□ -1.62
COL4A1P02462 YME1L1P1-201ENST00000429435 297 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 AC083863.1-201ENST00000438811 231 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 TPT1P1-201ENST00000458495 518 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 OR9M1P-201ENST00000459641 921 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 RNU7-143P-201ENST00000516781 65 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A1P02462 PHBP17-201ENST00000528576 541 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 SLC25A36P1-201ENST00000590111 465 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 AC012468.1-201ENST00000604888 430 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 MIR6075-201ENST00000620782 95 ntBASIC4.95□□□□□ -1.62
COL4A1P02462 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A1P02462 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A1P02462 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 MIR30B-201ENST00000384850 88 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AC007688.1-201ENST00000475592 759 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
COL4A1P02462 AC093853.1-201ENST00000515689 483 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.94□□□□□ -1.62
COL4A1P02462 AC008739.3-201ENST00000603262 127 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AC091167.4-201ENST00000605079 184 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AC090912.3-201ENST00000609775 533 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AL356121.2-201ENST00000624715 780 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 AC009093.8-201ENST00000641769 292 ntBASIC4.94□□□□□ -1.62
COL4A1P02462 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.94□□□□□ -1.62
COL4A1P02462 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A1P02462 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A1P02462 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.93□□□□□ -1.62
COL4A1P02462 TRIM60P17-201ENST00000415181 719 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 SYF2P2-201ENST00000417620 583 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 AC004448.2-201ENST00000422360 586 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 Z74696.2-201ENST00000436514 498 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC4.93□□□□□ -1.62
COL4A1P02462 RN7SL323P-201ENST00000494712 295 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 AC100770.1-201ENST00000532310 322 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 RPL23AP87-202ENST00000573039 466 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 RN7SL339P-201ENST00000580597 296 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.93□□□□□ -1.62
COL4A1P02462 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 AC138907.10-201ENST00000623708 983 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 VPS35P1-201ENST00000563400 1518 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 AP002512.4-202ENST00000641599 4530 ntBASIC4.93□□□□□ -1.62
COL4A1P02462 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A1P02462 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A1P02462 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A1P02462 AC091564.1-201ENST00000464563 479 ntBASIC4.92□□□□□ -1.62
COL4A1P02462 PPP1R11P1-201ENST00000486095 376 ntBASIC4.92□□□□□ -1.62
COL4A1P02462 RPL29P14-201ENST00000495837 428 ntBASIC4.92□□□□□ -1.62
COL4A1P02462 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.92□□□□□ -1.62
COL4A1P02462 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A1P02462 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A1P02462 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A1P02462 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A1P02462 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A1P02462 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A1P02462 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.92□□□□□ -1.62
COL4A1P02462 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A1P02462 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL4A1P02462 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL4A1P02462 VN1R8P-201ENST00000407739 893 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms