Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 CDH12P1-201ENST00000518435 295 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AP003355.1-201ENST00000518956 587 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 SNX6P1-201ENST00000601728 1224 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AC068620.3-201ENST00000602749 560 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AC018926.1-201ENST00000616335 435 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AL356274.1-201ENST00000617064 410 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AC008993.2-201ENST00000631744 806 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 AC099654.8-201ENST00000637757 681 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 DDX18P5-201ENST00000534547 1306 ntBASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SNX9Q9Y5X1 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL590240.1-201ENST00000334118 313 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RNU6-1251P-201ENST00000364502 107 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 MIR298-201ENST00000401212 88 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RNU2-50P-201ENST00000410494 143 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RNU4-27P-201ENST00000410889 139 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RPL23AP4-201ENST00000427757 463 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC022022.1-201ENST00000430304 178 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC016831.4-201ENST00000438302 307 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL645931.1-201ENST00000439737 410 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL096829.2-201ENST00000446582 742 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 BTF3P6-201ENST00000448054 499 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RPL7L1P1-201ENST00000448259 785 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC069277.2-201ENST00000454211 432 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC022795.1-201ENST00000473808 480 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RN7SL809P-201ENST00000482040 297 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RNU2-30P-201ENST00000516209 141 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 CYCSP40-201ENST00000575927 294 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC006116.5-201ENST00000591936 559 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC005021.1-201ENST00000608730 355 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC019131.2-201ENST00000609071 870 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 RMST_5.1-201ENST00000618704 126 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL627171.1-201ENST00000618845 1308 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AL133370.2-201ENST00000619934 439 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 AC007382.1-201ENST00000624376 2618 ntBASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SNX9Q9Y5X1 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 OR51H2P-202ENST00000641424 3046 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC012618.3-205ENST00000637896 1496 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AL024507.1-201ENST00000412741 274 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC019050.1-201ENST00000418508 492 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 CYCSP11-201ENST00000436426 315 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms