Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 NPM1P33-201ENST00000438918 872 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 MED6P1-201ENST00000439659 713 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC007000.2-201ENST00000442564 487 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC239809.1-201ENST00000450470 217 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 BX842559.2-201ENST00000451418 605 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 RPL12P20-201ENST00000475538 479 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC069304.1-201ENST00000491593 704 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 RN7SL441P-201ENST00000492388 296 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC010285.3-201ENST00000511668 676 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC012339.2-201ENST00000523996 453 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 CKS1BP1-201ENST00000555221 240 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC233266.2-201ENST00000567067 528 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AL355816.1-201ENST00000607951 118 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC055764.2-201ENST00000610089 670 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC100847.1-201ENST00000611316 481 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC068831.8-201ENST00000620171 435 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 AC011755.1-201ENST00000623763 2049 ntBASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.76□□□□□ -1.65
PCDHGA1Q9Y5H4 NCLP2-201ENST00000416078 1462 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 ECM1P2-201ENST00000503354 1577 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 RN7SKP106-201ENST00000410832 272 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC004690.1-201ENST00000418216 328 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 GTF2IP2-201ENST00000424290 697 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 COX6CP13-201ENST00000428703 226 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 RPL23AP1-201ENST00000428990 471 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AL035458.1-201ENST00000433096 585 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 CBX1P4-201ENST00000439415 457 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC091180.1-201ENST00000462104 372 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AL161747.1-201ENST00000480068 358 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 SCARNA22-201ENST00000503991 125 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 AC005191.1-201ENST00000603950 358 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 MIR6839-201ENST00000620425 113 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 FRG1EP-201ENST00000634469 770 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 BMS1P21-201ENST00000634565 365 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 MIR6830-201ENST00000636015 70 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PCDHGA1Q9Y5H4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 ZNF652P1-201ENST00000442420 1309 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 LINC01355-201ENST00000566551 5444 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AC083843.3-201ENST00000623679 2186 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 SNORD113.2-201ENST00000364166 89 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AL356057.1-202ENST00000402263 756 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AL049697.2-201ENST00000403708 294 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 HMGB1P13-201ENST00000406019 642 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AL390316.1-201ENST00000406279 553 ntBASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.74□□□□□ -1.65
PCDHGA1Q9Y5H4 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms