Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC093890.1-201ENST00000502554 540 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RN7SKP46-201ENST00000515942 234 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RNU6-1308P-201ENST00000516817 103 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RAB9BP1-201ENST00000519581 626 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 C1GALT1P3-201ENST00000522049 819 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 MIR3936-201ENST00000584304 110 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 MTCO3P22-201ENST00000603219 784 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC008966.2-201ENST00000606157 453 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AL121873.1-201ENST00000616013 524 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC006065.6-201ENST00000625201 545 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 PCAT14-202ENST00000627127 3935 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC093591.2-201ENST00000565254 3843 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC008033.1-201ENST00000216407 1162 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 IGKV7-3-201ENST00000357453 298 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 RNU6-40P-201ENST00000384254 107 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 RNU6-225P-201ENST00000384613 103 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 RN7SKP222-201ENST00000410651 315 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 GNG5P5-201ENST00000420444 220 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC009480.2-201ENST00000422916 432 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AL591363.1-201ENST00000450091 483 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 DHFRP3-201ENST00000455595 559 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC023158.1-201ENST00000561632 1025 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 HMGB2P1-201ENST00000591146 634 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC124856.1-201ENST00000600819 896 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 RPL26P30-202ENST00000602923 645 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC242628.1-201ENST00000606810 391 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AL021368.1-201ENST00000607490 540 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CR589904.2-201ENST00000612533 440 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AP001005.3-201ENST00000622049 129 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC091905.2-201ENST00000623143 306 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.52□□□□□ -1.69
LHX3Q9UBR4 MAPK10-286ENST00000641208 8747 ntBASIC4.52□□□□□ -1.69
LHX3Q9UBR4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC126755.2-208ENST00000327792 462 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC138969.1-213ENST00000331436 462 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 RNU6-666P-201ENST00000363499 107 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AL359643.1-201ENST00000404109 423 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 RPL18P10-201ENST00000425606 538 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 MTND4LP7-201ENST00000431728 294 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 FHP1-201ENST00000442741 703 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC009220.1-201ENST00000451614 275 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC243772.1-201ENST00000451620 410 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC092691.2-201ENST00000461787 803 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 ATP5G1P3-201ENST00000463301 410 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.51□□□□□ -1.69
LHX3Q9UBR4 RPS27AP16-201ENST00000492222 470 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 MTCO1P31-201ENST00000506355 492 ntBASIC4.51□□□□□ -1.69
LHX3Q9UBR4 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms