Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AL023806.3-201ENST00000638502 2704 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 AP003471.1-202ENST00000319051 1988 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC6.16□□□□□ -1.42
COL8A1P27658 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 RNU6-874P-201ENST00000362390 105 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU4-2-201ENST00000365668 141 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU6-1013P-201ENST00000384180 107 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU6-1109P-201ENST00000391187 107 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 TMSB4XP8-201ENST00000402089 135 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU2-9P-201ENST00000410194 145 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU4-26P-201ENST00000410270 107 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RN7SKP158-201ENST00000410453 326 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RN7SKP206-201ENST00000410823 293 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 RPL37P10-201ENST00000412884 288 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC074085.1-201ENST00000413598 418 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 TMSB4XP6-201ENST00000415187 135 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 RPL36P1-201ENST00000419720 225 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 TMSB4XP1-201ENST00000424567 135 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 FABP7P2-201ENST00000429946 379 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC018804.1-201ENST00000430381 618 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 AC023347.2-201ENST00000433994 462 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 AL353093.1-201ENST00000441292 436 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 DNAJC19P5-201ENST00000443295 316 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 HSFY6P-201ENST00000445573 403 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 HMGB1P7-201ENST00000450921 612 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 AC104308.1-201ENST00000454621 333 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 MIR2053-201ENST00000459295 91 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 HIGD1AP14-201ENST00000507617 282 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 FAM206BP-201ENST00000510179 541 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 SCARNA6-201ENST00000515982 265 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RN7SKP196-201ENST00000516267 345 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 Y_RNA.682-201ENST00000516457 100 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNU6-255P-201ENST00000516957 105 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 RNA5SP135-201ENST00000517019 125 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC087360.1-201ENST00000518788 616 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 NCAPGP2-201ENST00000557911 754 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 EEF1B2P1-201ENST00000567221 672 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 AC099489.2-201ENST00000574976 260 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL8A1P27658 AL138895.2-201ENST00000603019 178 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 RNU6-89P-201ENST00000606519 100 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC004908.1-201ENST00000606572 541 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.16□□□□□ -1.42
COL8A1P27658 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 MIR6798-201ENST00000612887 67 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 uc_338.31-201ENST00000615595 186 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC007485.1-201ENST00000616755 206 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.16□□□□□ -1.42
COL8A1P27658 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC138627.1-203ENST00000641872 1680 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL8A1P27658 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms