Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A1P20908 TBCAP1-201ENST00000436520 327 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 ARAFP2-201ENST00000440565 559 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4.15□□□□□ -1.75
COL5A1P20908 RPL7P49-201ENST00000471402 708 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.15□□□□□ -1.75
COL5A1P20908 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.15□□□□□ -1.75
COL5A1P20908 AC110768.1-201ENST00000509222 400 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.15□□□□□ -1.75
COL5A1P20908 DYNLL1P4-201ENST00000549314 266 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 AC107016.1-201ENST00000550463 337 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.15□□□□□ -1.75
COL5A1P20908 AC096577.2-201ENST00000611455 153 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
COL5A1P20908 AC007546.2-201ENST00000623996 360 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A1P20908 AC233968.1-201ENST00000611212 1300 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.15□□□□□ -1.75
COL5A1P20908 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A1P20908 AL138820.1-201ENST00000617901 5305 ntBASIC4.15□□□□□ -1.75
COL5A1P20908 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A1P20908 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A1P20908 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.15□□□□□ -1.75
COL5A1P20908 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.14□□□□□ -1.75
COL5A1P20908 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
COL5A1P20908 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL5A1P20908 RNA5SP130-201ENST00000364431 114 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 AC233289.1-201ENST00000403700 508 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 RN7SKP159-201ENST00000410657 292 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AC018644.1-201ENST00000429934 551 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 RPL23AP46-201ENST00000438548 490 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 ATP5G1P3-201ENST00000463301 410 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AC104164.2-201ENST00000496953 495 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 Z98200.1-201ENST00000607298 470 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 MIR7151-201ENST00000617477 60 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL5A1P20908 RNA5SP119-201ENST00000362715 117 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 MIR491-201ENST00000384877 84 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 VDAC1P9-201ENST00000412766 841 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 TPT1P2-201ENST00000413105 503 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.14□□□□□ -1.75
COL5A1P20908 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.14□□□□□ -1.75
COL5A1P20908 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 AC119751.5-201ENST00000514077 770 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 AC027807.1-201ENST00000559921 996 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AC011471.1-201ENST00000585766 187 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 AL451086.1-201ENST00000605596 223 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 AL589935.2-201ENST00000616471 1231 ntBASIC4.14□□□□□ -1.75
COL5A1P20908 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.14□□□□□ -1.75
COL5A1P20908 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.14□□□□□ -1.75
COL5A1P20908 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC4.14□□□□□ -1.75
COL5A1P20908 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.14□□□□□ -1.75
COL5A1P20908 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
COL5A1P20908 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL5A1P20908 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
COL5A1P20908 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 CASC19-204ENST00000641001 2055 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL5A1P20908 RN7SKP74-201ENST00000362849 309 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 RNA5SP513-201ENST00000364648 118 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.13□□□□□ -1.75
COL5A1P20908 SNORD96B-201ENST00000386148 79 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms