Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL6A1P12109 AC104446.1-201ENST00000613728 1321 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 AC111188.2-201ENST00000529697 1387 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 PWAR1-201ENST00000624188 2414 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A1P12109 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 MIR192-201ENST00000384915 110 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 MCTS2P-201ENST00000394552 546 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 UBE2V1P10-201ENST00000414685 269 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 Z75741.2-201ENST00000417272 1167 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AL365220.1-201ENST00000432923 399 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 AC011753.3-201ENST00000443436 406 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 MTND4P18-201ENST00000447010 465 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 LINC00888-204ENST00000487386 421 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 TRBV5-2-201ENST00000489095 273 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A1P12109 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC6.13□□□□□ -1.43
COL6A1P12109 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A1P12109 ZNF415P1-201ENST00000582279 1166 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 SS18L2P2-201ENST00000583960 235 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 VN1R88P-201ENST00000596787 292 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC234771.5-201ENST00000600161 514 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC096553.1-201ENST00000605169 829 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AL021997.1-201ENST00000605757 193 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AP002360.4-201ENST00000606980 481 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 AC009237.15-201ENST00000610252 501 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AC073114.1-201ENST00000612027 490 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 AL355073.2-201ENST00000612106 557 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL6A1P12109 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A1P12109 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 AC027514.1-201ENST00000588561 1603 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL6A1P12109 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A1P12109 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A1P12109 INTS6P1-201ENST00000504674 2530 ntBASIC6.13□□□□□ -1.43
COL6A1P12109 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL6A1P12109 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL6A1P12109 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 RNU6-413P-201ENST00000384115 107 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 MIR320B1-201ENST00000390209 79 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AL590139.1-201ENST00000416267 400 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AL593851.1-201ENST00000426171 157 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC124944.2-201ENST00000429866 1242 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC6.12□□□□□ -1.43
COL6A1P12109 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 MTCYBP42-201ENST00000444653 1130 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AC104689.1-201ENST00000473356 768 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 RPL5P22-201ENST00000480199 884 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms