Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MRPL48P1-201ENST00000445390 636 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 RPS11P1-201ENST00000451072 473 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 NANOGP10-201ENST00000453325 895 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 RPL7P9-201ENST00000468715 747 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 AC090136.1-201ENST00000520009 240 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 AL450472.3-201ENST00000615578 367 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 CASC19-261ENST00000641853 1638 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 OR56B2P-201ENST00000317102 954 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 MIR133A2-201ENST00000347538 102 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RNU4-6P-201ENST00000410804 122 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 OR5BE1P-201ENST00000425977 939 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL591363.1-201ENST00000450091 483 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RPL7P22-201ENST00000466005 733 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC108751.2-201ENST00000469993 231 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 NPM1P21-201ENST00000513394 762 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP303-201ENST00000516192 130 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RN7SKP289-201ENST00000517244 295 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 IFITM8P-201ENST00000522529 394 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC090312.1-201ENST00000580637 348 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 MIR5195-201ENST00000583555 115 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC116312.1-201ENST00000606841 314 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 OR5BE1P-202ENST00000641168 1176 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP175-201ENST00000364275 119 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 HSPE1P12-201ENST00000412576 301 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL049873.1-201ENST00000480540 376 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC090286.3-201ENST00000573133 187 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AL021997.2-201ENST00000615674 271 ntBASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.48□□□□□ -1.53
SHANK3Q9BYB0 AC104623.2-202ENST00000623477 4002 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 AC104849.1-201ENST00000462623 405 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 UBE2DNL-203ENST00000474922 222 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 PAICSP4-201ENST00000517543 1253 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 SOD1P3-201ENST00000518682 454 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 AC114878.2-201ENST00000604863 1251 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.47□□□□□ -1.53
SHANK3Q9BYB0 AC024560.2-201ENST00000507981 1497 ntBASIC5.46□□□□□ -1.53
SHANK3Q9BYB0 VN1R51P-201ENST00000411675 945 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AC115115.1-201ENST00000449927 248 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 ATP5G1P3-201ENST00000463301 410 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AC007688.1-201ENST00000475592 759 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms