Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.99□□□□□ -1.29
NPAS3Q8IXF0 UG0898H09-202ENST00000623646 7040 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC007938.1-201ENST00000562524 2902 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC092725.2-201ENST00000567658 1389 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 CDC27P3-201ENST00000635418 1910 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC007342.7-201ENST00000624610 2337 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 HCG18-244ENST00000602516 2890 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 OR4A15-201ENST00000314706 1035 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 MIR323B-201ENST00000385269 82 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 RPL9P21-201ENST00000392269 505 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 DPH3P2-201ENST00000422618 250 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 DNAJC19P7-201ENST00000428811 344 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC104332.1-201ENST00000440471 797 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 GAPDHP33-201ENST00000443168 1013 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 RPL12P25-201ENST00000455592 494 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 HSD3BP3-201ENST00000514706 994 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AL121594.2-201ENST00000541658 472 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC092718.4-201ENST00000566639 716 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ATP5F1P7-201ENST00000567330 760 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 RN7SL199P-201ENST00000578752 281 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 RN7SL656P-201ENST00000579044 281 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 RN7SL270P-201ENST00000579643 281 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC005726.4-201ENST00000582858 458 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC011626.1-201ENST00000604710 562 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 MIR98-201ENST00000606724 119 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 AC011379.1-201ENST00000508713 3025 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 PRNCR1-201ENST00000635449 12727 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 TMCC1P1-201ENST00000518897 1980 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
NPAS3Q8IXF0 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 ENO1P4-201ENST00000416471 1785 ntBASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 Y_RNA.112-201ENST00000363250 102 ntBASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 RNU1-84P-201ENST00000365447 164 ntBASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
NPAS3Q8IXF0 RN7SKP232-201ENST00000410170 290 ntBASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 146.7 ms