Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL590609.2-201ENST00000421430 368 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC006065.1-201ENST00000422539 802 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL360081.1-201ENST00000428299 555 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL606490.7-201ENST00000433136 191 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC093716.1-201ENST00000435923 377 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 SCARNA10-201ENST00000459255 330 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC098799.1-201ENST00000504752 800 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 RNA5SP154-201ENST00000516193 111 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 PDCD5P1-201ENST00000543528 309 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 SNRPGP1-201ENST00000553864 222 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 RN7SL652P-201ENST00000577769 300 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC091042.1-201ENST00000579213 173 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC007448.1-201ENST00000582714 234 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 MTCO2P22-201ENST00000603246 681 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 MIR6853-201ENST00000619642 74 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SKA3Q8IX90 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SKA3Q8IX90 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 RN7SKP103-201ENST00000363848 320 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 RNA5SP87-201ENST00000384155 118 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 RPL5P19-201ENST00000404228 893 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AL080315.1-201ENST00000406055 466 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 BX510359.2-201ENST00000417920 305 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC016831.4-201ENST00000438302 307 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 BTBD7P2-201ENST00000441962 620 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 H2AFZP5-201ENST00000446960 382 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC025181.1-201ENST00000477507 416 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC108157.1-201ENST00000510511 539 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 RNU2-30P-201ENST00000516209 141 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 MTCYBP19-201ENST00000517463 1124 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 HMGB3P26-201ENST00000560051 582 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 OR1AB1P-201ENST00000585564 761 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 MIMT1-201ENST00000597105 1050 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC098935.2-201ENST00000604222 466 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 OR7A19P-201ENST00000608051 733 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC019131.2-201ENST00000609071 870 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC026368.1-201ENST00000614934 690 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC003001.2-201ENST00000616294 831 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AL356274.1-201ENST00000617064 410 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC004232.3-201ENST00000622977 525 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AP001784.1-201ENST00000624107 428 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AP002967.1-201ENST00000624203 539 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 AC092159.4-201ENST00000624944 550 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 OR5AC4P-202ENST00000642086 985 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 AL672167.1-205ENST00000641112 3080 ntBASIC4.12□□□□□ -1.75
SKA3Q8IX90 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SKA3Q8IX90 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.12□□□□□ -1.75
SKA3Q8IX90 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AL035419.1-201ENST00000397037 564 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 GSTA12P-201ENST00000402398 508 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AL133270.1-201ENST00000402635 279 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC140479.3-201ENST00000418944 1126 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC004552.1-201ENST00000419089 348 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC092570.3-201ENST00000420113 693 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms