Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC009033.1-201ENST00000624279 431 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 LRRC77P-213ENST00000637727 880 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
RNF4P78317 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 AC079097.1-201ENST00000512187 1399 ntBASIC5.91□□□□□ -1.46
RNF4P78317 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.9□□□□□ -1.46
RNF4P78317 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 AC105235.1-201ENST00000623208 1816 ntBASIC5.9□□□□□ -1.46
RNF4P78317 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.9□□□□□ -1.46
RNF4P78317 AL136984.1-201ENST00000607611 1893 ntBASIC5.9□□□□□ -1.46
RNF4P78317 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.9□□□□□ -1.46
RNF4P78317 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 AC017104.4-201ENST00000636283 1592 ntBASIC5.9□□□□□ -1.46
RNF4P78317 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 OR4K15-201ENST00000305051 1216 ntBASIC5.9□□□□□ -1.46
RNF4P78317 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
RNF4P78317 RNU6-657P-201ENST00000383904 107 ntBASIC5.9□□□□□ -1.46
RNF4P78317 MT-TL1-201ENST00000386347 75 ntBASIC5.9□□□□□ -1.46
RNF4P78317 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
RNF4P78317 AC099535.1-201ENST00000408928 371 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RNA5SP198-201ENST00000410376 127 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RN7SKP86-201ENST00000410454 332 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RNU2-6P-201ENST00000411404 190 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RPS3AP3-201ENST00000411933 242 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RPS6P23-201ENST00000413224 722 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 AC099782.1-201ENST00000425889 474 ntBASIC5.9□□□□□ -1.46
RNF4P78317 NPM1P34-201ENST00000428821 893 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RPL7P11-201ENST00000437586 658 ntBASIC5.9□□□□□ -1.46
RNF4P78317 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 RPS4XP4-201ENST00000443195 763 ntBASIC5.9□□□□□ -1.46
RNF4P78317 DNAJC19P5-201ENST00000443295 316 ntBASIC5.9□□□□□ -1.46
RNF4P78317 CXCR2P1-202ENST00000443392 1074 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 EEF1B2P3-201ENST00000447718 678 ntBASIC5.9□□□□□ -1.46
RNF4P78317 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 AL590365.1-201ENST00000450788 243 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 RN7SL369P-201ENST00000477138 299 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RN7SL714P-201ENST00000487050 298 ntBASIC5.9□□□□□ -1.46
RNF4P78317 OR7E99P-201ENST00000505750 922 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.9□□□□□ -1.46
RNF4P78317 STMN1P2-201ENST00000508435 439 ntBASIC5.9□□□□□ -1.46
RNF4P78317 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 AC108064.1-201ENST00000513791 460 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC073581.1-201ENST00000519036 575 ntBASIC5.9□□□□□ -1.46
RNF4P78317 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 COX6B1P6-201ENST00000522347 255 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.9□□□□□ -1.46
RNF4P78317 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 RAB11AP2-201ENST00000545905 639 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC125612.1-201ENST00000547580 377 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
RNF4P78317 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 AC009977.1-201ENST00000586015 570 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 uc_338.9-201ENST00000617424 182 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC136475.10-201ENST00000620253 385 ntBASIC5.9□□□□□ -1.46
RNF4P78317 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.9□□□□□ -1.46
RNF4P78317 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
RNF4P78317 AL359976.1-201ENST00000418655 3528 ntBASIC5.9□□□□□ -1.47
RNF4P78317 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.9□□□□□ -1.47
RNF4P78317 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.9□□□□□ -1.47
RNF4P78317 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
RNF4P78317 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.9□□□□□ -1.47
RNF4P78317 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
RNF4P78317 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
RNF4P78317 CASC19-284ENST00000642142 1868 ntBASIC5.9□□□□□ -1.47
RNF4P78317 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
RNF4P78317 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
RNF4P78317 AC125336.1-201ENST00000508893 2827 ntBASIC5.89□□□□□ -1.47
RNF4P78317 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 AC022905.1-201ENST00000503430 3048 ntBASIC5.89□□□□□ -1.47
RNF4P78317 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms