Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 DNM1P47-203ENST00000571780 12667 ntBASIC6.44□□□□□ -1.38
LIG3P49916 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.43□□□□□ -1.38
LIG3P49916 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.43□□□□□ -1.38
LIG3P49916 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AL031985.3-201ENST00000565390 2449 ntBASIC6.43□□□□□ -1.38
LIG3P49916 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 RNA5SP453-201ENST00000362503 119 ntBASIC6.43□□□□□ -1.38
LIG3P49916 RNA5SP232-201ENST00000364144 119 ntBASIC6.43□□□□□ -1.38
LIG3P49916 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 HMGN1P14-201ENST00000412459 517 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AL136133.1-201ENST00000413694 376 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.43□□□□□ -1.38
LIG3P49916 TMBIM7P-201ENST00000418074 855 ntBASIC6.43□□□□□ -1.38
LIG3P49916 MTCO3P1-205ENST00000422088 832 ntBASIC6.43□□□□□ -1.38
LIG3P49916 CYCSP52-201ENST00000422857 310 ntBASIC6.43□□□□□ -1.38
LIG3P49916 OSTCP4-201ENST00000424397 449 ntBASIC6.43□□□□□ -1.38
LIG3P49916 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 MTCO2P19-201ENST00000427513 598 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC005033.1-201ENST00000428904 813 ntBASIC6.43□□□□□ -1.38
LIG3P49916 BMS1P19-201ENST00000433925 393 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AL121601.2-201ENST00000438019 707 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AC079922.1-201ENST00000443291 359 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC005297.1-201ENST00000444765 862 ntBASIC6.43□□□□□ -1.38
LIG3P49916 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 NF1P3-201ENST00000457709 450 ntBASIC6.43□□□□□ -1.38
LIG3P49916 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.43□□□□□ -1.38
LIG3P49916 SNORD42A-201ENST00000459584 64 ntBASIC6.43□□□□□ -1.38
LIG3P49916 RN7SL552P-201ENST00000462094 276 ntBASIC6.43□□□□□ -1.38
LIG3P49916 RN7SL168P-201ENST00000463821 279 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC090602.1-201ENST00000469695 252 ntBASIC6.43□□□□□ -1.38
LIG3P49916 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.43□□□□□ -1.38
LIG3P49916 AC113367.2-201ENST00000505749 160 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.43□□□□□ -1.38
LIG3P49916 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
LIG3P49916 IMPA1P1-201ENST00000510718 842 ntBASIC6.43□□□□□ -1.38
LIG3P49916 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC6.43□□□□□ -1.38
LIG3P49916 AC027309.2-201ENST00000520566 192 ntBASIC6.43□□□□□ -1.38
LIG3P49916 OR4A45P-201ENST00000529954 901 ntBASIC6.43□□□□□ -1.38
LIG3P49916 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AC125612.1-201ENST00000547580 377 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.43□□□□□ -1.38
LIG3P49916 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 RN7SL475P-201ENST00000583379 298 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC6.43□□□□□ -1.38
LIG3P49916 SLC25A36P1-201ENST00000590111 465 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AC069304.2-201ENST00000605154 435 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AL359314.1-201ENST00000616913 261 ntBASIC6.43□□□□□ -1.38
LIG3P49916 AL121890.2-201ENST00000617644 465 ntBASIC6.43□□□□□ -1.38
LIG3P49916 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
LIG3P49916 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.43□□□□□ -1.38
LIG3P49916 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
LIG3P49916 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 EIF3EP1-201ENST00000433978 1316 ntBASIC6.43□□□□□ -1.38
LIG3P49916 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIG3P49916 GTF2IP4-201ENST00000453092 2054 ntBASIC6.43□□□□□ -1.38
LIG3P49916 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
LIG3P49916 AOX3P-204ENST00000491025 2107 ntBASIC6.43□□□□□ -1.38
LIG3P49916 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.42□□□□□ -1.38
LIG3P49916 AC125238.2-201ENST00000430003 1440 ntBASIC6.42□□□□□ -1.38
LIG3P49916 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC6.42□□□□□ -1.38
LIG3P49916 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIG3P49916 MAPK10-338ENST00000641647 3362 ntBASIC6.42□□□□□ -1.38
LIG3P49916 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIG3P49916 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIG3P49916 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
LIG3P49916 RN7SKP226-201ENST00000364912 300 ntBASIC6.42□□□□□ -1.38
LIG3P49916 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.42□□□□□ -1.38
LIG3P49916 CUBN-201ENST00000377823 705 ntTSL 3 BASIC6.42□□□□□ -1.38
LIG3P49916 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
LIG3P49916 RNU6-272P-201ENST00000411028 104 ntBASIC6.42□□□□□ -1.38
LIG3P49916 HMGB1P11-201ENST00000413899 637 ntBASIC6.42□□□□□ -1.38
LIG3P49916 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.42□□□□□ -1.38
LIG3P49916 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC6.42□□□□□ -1.38
LIG3P49916 AC245052.5-201ENST00000416320 649 ntBASIC6.42□□□□□ -1.38
LIG3P49916 OFD1P18Y-201ENST00000420889 959 ntBASIC6.42□□□□□ -1.38
LIG3P49916 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC6.42□□□□□ -1.38
LIG3P49916 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms