Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 TRIM51GP-201ENST00000534741 1350 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 RNA5SP27-201ENST00000363839 119 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 RNU4-68P-201ENST00000364314 141 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 RNU4-4P-201ENST00000364588 130 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
SMARCA1P28370 Z97832.1-201ENST00000402490 328 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AL035079.1-201ENST00000405210 287 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 SNORA11B-201ENST00000408175 129 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 RN7SKP222-201ENST00000410651 315 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC107081.1-201ENST00000414975 361 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 PTMAP6-201ENST00000439110 327 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC092647.3-201ENST00000443044 633 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 RPL7AP61-201ENST00000443410 636 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 RPL34P26-201ENST00000445636 354 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC008837.1-201ENST00000511513 412 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.86□□□□□ -1.47
SMARCA1P28370 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 RNA5SP43-201ENST00000516559 110 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC100784.1-201ENST00000522790 310 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC104417.1-201ENST00000523974 751 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC006518.2-201ENST00000542513 940 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC044860.2-201ENST00000561005 179 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 MIR4691-201ENST00000583764 85 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 BNIP3P24-201ENST00000593398 557 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 PCNAP1-202ENST00000595299 752 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.86□□□□□ -1.47
SMARCA1P28370 DUXAP3-201ENST00000603616 594 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC092954.1-201ENST00000609121 445 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC093783.1-201ENST00000612976 329 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 FRG1HP-204ENST00000617940 757 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AC112694.2-201ENST00000623697 768 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC092376.2-201ENST00000622621 4116 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 AC093591.2-201ENST00000565254 3843 ntBASIC5.86□□□□□ -1.47
SMARCA1P28370 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.86□□□□□ -1.47
SMARCA1P28370 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
SMARCA1P28370 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SMARCA1P28370 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 STX3-208ENST00000641815 3236 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AL022311.1-201ENST00000623726 19416 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 RNA5SP428-201ENST00000365129 132 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 SNORA66-201ENST00000384792 133 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 SNORA77-201ENST00000408716 125 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.85□□□□□ -1.47
SMARCA1P28370 GJA6P-201ENST00000415117 1042 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 RPS24P7-201ENST00000416921 246 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.85□□□□□ -1.47
SMARCA1P28370 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 VN1R54P-201ENST00000435210 1049 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.85□□□□□ -1.47
SMARCA1P28370 YWHAZP2-201ENST00000440317 728 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.85□□□□□ -1.47
SMARCA1P28370 AL591623.2-201ENST00000449978 222 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 VN1R40P-201ENST00000455196 941 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AC079203.1-201ENST00000487972 404 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 RPL5P23-201ENST00000496040 868 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.85□□□□□ -1.47
SMARCA1P28370 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms