Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC025918.2-201ENST00000558683 763 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.76□□□□□ -1.65
MSH3P20585 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.76□□□□□ -1.65
MSH3P20585 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.76□□□□□ -1.65
MSH3P20585 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 AL158050.2-201ENST00000605336 568 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC034229.4-201ENST00000607861 441 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AL049539.1-201ENST00000611964 459 ntBASIC4.76□□□□□ -1.65
MSH3P20585 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
MSH3P20585 AC105105.5-201ENST00000622635 1294 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AP001002.2-201ENST00000625137 386 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AL356118.1-201ENST00000635272 1078 ntBASIC4.76□□□□□ -1.65
MSH3P20585 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
MSH3P20585 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 SMG1P6-201ENST00000532337 2930 ntBASIC4.76□□□□□ -1.65
MSH3P20585 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
MSH3P20585 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 RNA5SP191-201ENST00000362585 102 ntBASIC4.75□□□□□ -1.65
MSH3P20585 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 RPL5P19-201ENST00000404228 893 ntBASIC4.75□□□□□ -1.65
MSH3P20585 U3.35-201ENST00000408405 208 ntBASIC4.75□□□□□ -1.65
MSH3P20585 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 RNA5SP113-201ENST00000410486 84 ntBASIC4.75□□□□□ -1.65
MSH3P20585 RNU4-27P-201ENST00000410889 139 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AL158050.1-201ENST00000416077 457 ntBASIC4.75□□□□□ -1.65
MSH3P20585 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 RGS17P1-201ENST00000423358 553 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC093084.1-201ENST00000424233 687 ntBASIC4.75□□□□□ -1.65
MSH3P20585 MTND4LP13-201ENST00000425022 298 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 OR2B7P-201ENST00000429302 934 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AC008072.1-201ENST00000434254 824 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AL645638.1-201ENST00000440519 361 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC092691.2-201ENST00000461787 803 ntBASIC4.75□□□□□ -1.65
MSH3P20585 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 AC121161.1-201ENST00000510606 652 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 MTCO3P27-201ENST00000514397 196 ntBASIC4.75□□□□□ -1.65
MSH3P20585 RNU1-6P-201ENST00000516290 144 ntBASIC4.75□□□□□ -1.65
MSH3P20585 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.75□□□□□ -1.65
MSH3P20585 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.75□□□□□ -1.65
MSH3P20585 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 AP001880.2-201ENST00000538233 448 ntBASIC4.75□□□□□ -1.65
MSH3P20585 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AC023158.1-201ENST00000561632 1025 ntBASIC4.75□□□□□ -1.65
MSH3P20585 RN7SL802P-201ENST00000577858 299 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.75□□□□□ -1.65
MSH3P20585 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.75□□□□□ -1.65
MSH3P20585 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.75□□□□□ -1.65
MSH3P20585 AC124856.1-201ENST00000600819 896 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AF230666.2-201ENST00000602328 725 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AC011453.2-201ENST00000603737 729 ntBASIC4.75□□□□□ -1.65
MSH3P20585 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.75□□□□□ -1.65
MSH3P20585 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 AP001033.2-201ENST00000609701 1003 ntBASIC4.75□□□□□ -1.65
MSH3P20585 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 AL445984.1-201ENST00000637834 659 ntBASIC4.75□□□□□ -1.65
MSH3P20585 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH3P20585 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
MSH3P20585 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
MSH3P20585 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.75□□□□□ -1.65
MSH3P20585 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
MSH3P20585 AC132825.1-201ENST00000463573 2247 ntBASIC4.74□□□□□ -1.65
MSH3P20585 AL136164.3-201ENST00000624429 3978 ntBASIC4.74□□□□□ -1.65
MSH3P20585 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
MSH3P20585 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSH3P20585 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSH3P20585 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSH3P20585 RNU6-1000P-201ENST00000391066 106 ntBASIC4.74□□□□□ -1.65
MSH3P20585 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.74□□□□□ -1.65
MSH3P20585 TAF9BP2-201ENST00000400856 499 ntBASIC4.74□□□□□ -1.65
MSH3P20585 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.74□□□□□ -1.65
MSH3P20585 FABP7P2-201ENST00000429946 379 ntBASIC4.74□□□□□ -1.65
MSH3P20585 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.74□□□□□ -1.65
MSH3P20585 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.74□□□□□ -1.65
MSH3P20585 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.74□□□□□ -1.65
MSH3P20585 NRBF2P3-201ENST00000432731 865 ntBASIC4.74□□□□□ -1.65
MSH3P20585 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.74□□□□□ -1.65
MSH3P20585 AC006466.1-201ENST00000438721 289 ntBASIC4.74□□□□□ -1.65
MSH3P20585 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms