Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG1P18858 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG1P18858 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG1P18858 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG1P18858 AL137072.1-201ENST00000603444 466 ntBASIC6.81□□□□□ -1.32
LIG1P18858 AP003117.2-201ENST00000606010 545 ntBASIC6.81□□□□□ -1.32
LIG1P18858 AP004607.9-201ENST00000618202 316 ntBASIC6.81□□□□□ -1.32
LIG1P18858 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG1P18858 AC099654.14-201ENST00000638599 341 ntBASIC6.81□□□□□ -1.32
LIG1P18858 AC093225.1-201ENST00000506867 1408 ntBASIC6.81□□□□□ -1.32
LIG1P18858 SMG1P7-201ENST00000565246 2704 ntBASIC6.81□□□□□ -1.32
LIG1P18858 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
LIG1P18858 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG1P18858 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG1P18858 AL606537.1-201ENST00000607258 2011 ntBASIC6.81□□□□□ -1.32
LIG1P18858 DNM1P47-203ENST00000571780 12667 ntBASIC6.81□□□□□ -1.32
LIG1P18858 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG1P18858 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG1P18858 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
LIG1P18858 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG1P18858 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 THAP12P9-201ENST00000503971 2360 ntBASIC6.8□□□□□ -1.32
LIG1P18858 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 Y_RNA.18-201ENST00000362461 102 ntBASIC6.8□□□□□ -1.32
LIG1P18858 RNU1-134P-201ENST00000362935 165 ntBASIC6.8□□□□□ -1.32
LIG1P18858 RN7SKP128-201ENST00000364270 303 ntBASIC6.8□□□□□ -1.32
LIG1P18858 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 snosnR66.1-201ENST00000391095 99 ntBASIC6.8□□□□□ -1.32
LIG1P18858 HMGB3P18-201ENST00000406327 590 ntBASIC6.8□□□□□ -1.32
LIG1P18858 HMGN1P14-201ENST00000412459 517 ntBASIC6.8□□□□□ -1.32
LIG1P18858 MYL6P5-201ENST00000412707 459 ntBASIC6.8□□□□□ -1.32
LIG1P18858 RPS7P8-201ENST00000418311 581 ntBASIC6.8□□□□□ -1.32
LIG1P18858 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 DNAJC19P4-201ENST00000440115 345 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.8□□□□□ -1.32
LIG1P18858 FRG2FP-204ENST00000453982 852 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 AC009963.3-201ENST00000458090 486 ntBASIC6.8□□□□□ -1.32
LIG1P18858 RPL38P3-201ENST00000484463 213 ntBASIC6.8□□□□□ -1.32
LIG1P18858 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.8□□□□□ -1.32
LIG1P18858 RN7SKP238-201ENST00000516483 249 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.8□□□□□ -1.32
LIG1P18858 AP001646.1-201ENST00000527936 915 ntBASIC6.8□□□□□ -1.32
LIG1P18858 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
LIG1P18858 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 NTS-203ENST00000551529 801 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG1P18858 AC009063.1-201ENST00000563342 702 ntBASIC6.8□□□□□ -1.32
LIG1P18858 OR4K7P-201ENST00000580232 945 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG1P18858 AC060780.2-201ENST00000589047 198 ntBASIC6.8□□□□□ -1.32
LIG1P18858 IMMP1LP1-201ENST00000605170 488 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AL159169.3-201ENST00000608871 561 ntBASIC6.8□□□□□ -1.32
LIG1P18858 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 AC106028.5-201ENST00000610332 395 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AC090970.3-201ENST00000612566 866 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AL589743.7-201ENST00000612637 233 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AL357080.1-201ENST00000617394 239 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AC138932.5-201ENST00000617759 563 ntBASIC6.8□□□□□ -1.32
LIG1P18858 AC011815.3-201ENST00000624194 473 ntBASIC6.8□□□□□ -1.32
LIG1P18858 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
LIG1P18858 AC010266.2-201ENST00000564741 3255 ntBASIC6.8□□□□□ -1.32
LIG1P18858 LYARP1-201ENST00000436977 1501 ntBASIC6.8□□□□□ -1.32
LIG1P18858 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG1P18858 AL354854.1-201ENST00000455940 1363 ntBASIC6.8□□□□□ -1.32
LIG1P18858 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
LIG1P18858 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG1P18858 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
LIG1P18858 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG1P18858 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG1P18858 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
LIG1P18858 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
LIG1P18858 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG1P18858 METTL21EP-201ENST00000298105 713 ntBASIC6.79□□□□□ -1.32
LIG1P18858 COX6B1P3-201ENST00000312310 260 ntBASIC6.79□□□□□ -1.32
LIG1P18858 FGF7P2-201ENST00000332473 296 ntBASIC6.79□□□□□ -1.32
LIG1P18858 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG1P18858 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG1P18858 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
LIG1P18858 RN7SKP240-201ENST00000410583 375 ntBASIC6.79□□□□□ -1.32
LIG1P18858 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG1P18858 RPL23AP39-201ENST00000415533 405 ntBASIC6.79□□□□□ -1.32
LIG1P18858 ATG4AP1-201ENST00000416893 538 ntBASIC6.79□□□□□ -1.32
LIG1P18858 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms